Geotrypetes seraphini (Gaboon caecilian): 117364457
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Entry
117364457 CDS
T09159
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015
mRNA surveillance pathway
gsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117364457 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
117364457 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117364457 (PABPC4)
03041 Spliceosome [BR:
gsh03041
]
117364457 (PABPC4)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117364457 (PABPC4)
mRNA cycle factors
Stress granule specific factors
117364457 (PABPC4)
Spliceosome [BR:
gsh03041
]
Complex C
Other components
Complex C specific factors
117364457 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_10
RRM_occluded
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
117364457
NCBI-ProteinID:
XP_033809542
UniProt:
A0A6P8RWJ4
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All DBs
Position
8:complement(27085303..27134788)
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AA seq
631 aa
AA seq
DB search
MNNAASTYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
EELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSIKVMTDSTGKSKGFGFVSFEK
HEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRNEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTSQYMQRIAGMRALPASTIINQFQPAAGGYFMPAVPQTQSRP
AYYAPNQMAQIRPNPRWQQGGRPQAGFQGMSNLMRQSGPRPTLRHLAPSASTQGSRSLLS
TTQRGGISSATQNLVPRTAVVVPPPRAVPPYKYSPSARSPHPAVQSLQAPQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVEEAVAVLQAHQAKKEAAQKVGVVTATS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgccgccagcacttaccccatggcctccctctacgtgggggacctgcacccc
gacgtcaccgaggccatgctctacgagaagttcagcccggcggggcctgtgctctccatc
cgcgtctgcagggacatgatcacgcgcaggtcgctgggctacgcctacgtcaacttccag
cagccggccgatgcggaacgtgctctggacaccatgaacttcgatgtgataaaaggcaag
cccattcgtatcatgtggtctcagcgtgacccttctttgaggaaatcaggggttggcaat
gtcttcatcaagaatctggacaagtccatagacaataaagcactttatgataccttctct
gcatttgggaacatactgtcttgcaaggtagtgtgtgacgagaatggatctaaaggctac
gcctttgtgcactttgaaactcaggatgcagcagacagagcaattgagaagatgaatggc
atgctactgaatgatcgcaaagtctttgttgggcgctttaagtctcgaaaagagcgggag
gaggaactgggagcaagagcaaaggaattcacaaacgtttacatcaagaactttggagat
gacatggatgatgagagactgaaggagatgttcagcaaatatgggaagactctgagtatt
aaagtaatgacagactccactggtaaatccaagggttttggctttgtcagttttgagaag
catgaagatgcaaacaaggctgtggaggagatgaatgggaaggacgtcaatggaaaaatg
gtgtttgtgggtcgtgctcagaaaaaggtggagcgccaggcagaactgaaaaggaagttt
gagcagctaaaacaggagagaatcagcaggtaccagggtgtgaatctgtatattaagaac
ctagatgacaccattgatgacgagaaattgaggaacgagttctctccgtttggatctatt
accagtgccaaggtgatgctagaggatgggcgaagtaaaggctttggctttgtgtgtttc
tcctcaccggaagaggccaccaaagctgtcacagagatgaatggacgcattgtgggttct
aagcccctctatgtggcacttgcgcaaaggaaagaggagaggaaggcacatctcaccagt
cagtacatgcaacgcattgcaggcatgcgagccctgcctgcaagcaccatcatcaaccag
ttccagccagctgctgggggatacttcatgccagcagtgcctcagactcaaagcagacct
gcttactatgcacccaaccagatggctcaaataaggccgaatccacgttggcaacagggg
ggaagacctcaggctgggttccagggcatgtcaaacttaatgcgccagagtgggccaaga
ccaacactgcgtcatctggcaccatctgccagcacccagggctcccggagccttctgagc
actacacaaagaggcgggatctccagtgctactcagaaccttgttcctcgtacagcagtt
gttgttccacctccccgggcagttcctccctacaagtacagccctagtgctcggagtccc
cacccagcagtgcagtctttgcaggcccctcagcctgctgtccacgtgcagggacaggag
cccctgacagcctccatgctggctgctgccccgccgcaggaacagaaacagatgttgggg
gaacgattatttccactgatccaagctatgcaccccagcttagctgggaagatcacagga
atgctgctagagattgataactctgagttattgcacatgctggagtcaccagaatctctc
cgctcaaaagtggaggaagctgtggctgtattacaggctcatcaggctaaaaaggaagct
gcccagaaggtgggcgtggtcactgctacctcttaa
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