Geotrypetes seraphini (Gaboon caecilian): 117364706
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Entry
117364706 CDS
T09159
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
gsh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117364706 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117364706 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117364706 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117364706 (SMARCB1)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117364706 (SMARCB1)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117364706 (SMARCB1)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117364706 (SMARCB1)
SWI/SNF complex
117364706 (SMARCB1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117364706 (SMARCB1)
PBAF complex
117364706 (SMARCB1)
SWI/SNF complex
117364706 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
117364706
NCBI-ProteinID:
XP_033810108
UniProt:
A0A6P8RYA8
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All DBs
Position
8:complement(132944471..132978325)
Genome browser
AA seq
413 aa
AA seq
DB search
MRGLRRLRIGKAICLPRGGGRLRSEWQGEGREVAKMIMALSKTFGQKPVKFQLEEDGEFF
MIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKYHGYTTLATSVTLLK
ASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTIN
RNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKL
MTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGN
ISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENP
LPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagaggacttcggcgcctgcgcattgggaaggctatttgcctgccgcgaggcggtggg
cgcctgcgcagtgagtggcaaggcgagggacgcgaagttgccaagatgataatggcgttg
agtaaaacgtttggccaaaagccggtgaagttccagctggaggaggatggggagtttttc
atgatcggctccgaggtgggaaactatttgcgtatgttcagaggctctctgtataagagg
tacccttctctttggagaagactagcaacagtggaggaaagaaaaaaaatagtagcttcg
tctcatggaaaaaaataccatggatacacaacattggccacaagtgtaaccctcttgaaa
gcctcagaagtagaagagatcttggatgggaatgatgagaaatacaaggcagtatccatc
agcactgaacccccaacctacctcagagagcagaaggcaaagaggaatagccagtgggtt
ccaactctaccaaatagctcccaccatcttgatgctgtgccctgctcaacaaccatcaac
aggaatcgcatggggagggataagaagcggacattccccctctgttttgatgaccacgac
cctgcagtgattcatgagaatgcttcccagcctgaggttttagttcccatcagacttgat
atggaaattgatgggcagaaactgcgagatgcctttacatggaatatgaatgagaagcta
atgaccccagaaatgtttgcagagattctgtgtgatgacctggatttgaaccctctgact
tttgtccctgctatcgcctctgccatccggcagcaaattgagtcctatcctactgatagt
atcttagaggaccagtctgatcaacgggtcattattaagctaaatatccatgttggaaac
atttctctggtggaccagtttgagtgggacatgtctgagaaggagaactctcctgagaag
tttgccctgaagctgtgttcagaattggggctaggtggggagtttgtcactaccattgct
tacagcatccgtgggcagctgagctggcatcagaagacatatgcattcagtgagaaccca
ctgccaactgtagagattgcaatccggaatacaggtgatgcagaccagtggtgccccctc
ttggaaactctgactgatgcagagatggagaagaagattcgtgatcaggacaggaacacc
aggcgtatgagacgtcttgccaacacagctccagcctggtaa
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