Geotrypetes seraphini (Gaboon caecilian): 117364870
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Entry
117364870 CDS
T09159
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gsh03009
]
117364870 (DDX55)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117364870 (DDX55)
Ribosome biogenesis [BR:
gsh03009
]
Eukaryotic type
Pre-60S particles
Helicases
117364870 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
AAA_22
Motif
Other DBs
NCBI-GeneID:
117364870
NCBI-ProteinID:
XP_033810478
UniProt:
A0A6P8RZA3
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All DBs
Position
8:complement(152889736..152913558)
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AA seq
588 aa
AA seq
DB search
MEGAWESLPVRLHEKVMQTLRELRFTHMTPVQSAAIPLFMSNKDIAAEAITGSGKTLAFV
IPLLEILLRREEKLKKMQVGAIIITPTRELAIQINEVLSHFTRHFPQFSQILLIGGSNPA
EDVEKFKEHGGNIIVATPGRLVDMFRRKADGLDLASFVKALDVLVLDEADRLLDMGFEAS
LNTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPIRITVKEKGVAASSCQKTPTRLQN
YYMICKANEKFNHLVAFLRQRKQEKHLVFFSTCACVEYYGKALESFIKNVKIMCIHGKMK
HKRNKIFTEFRQLPSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGH
HGSALVFLLPMEESYINFLSINQKCPMQEMKPLKNSVDHLPKLKSLALADRAMFEKGMKA
FVSYVQAYAKHECSLIFRVKDLDFASLAQGFGLLKMPKMPELKGKNVSDFTPTNIDTDSI
AYKDKNREKLRRKVLEEHKKQQRESREQKKFCKNKAWSKQKAKKEKRKKVAEKRKQEEGF
EMEEEDLDDLLNDTRLLKKLKRGKISEEEFEKQFLHSKRKVEDEDADD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgcctgggaaagtctcccggttcggctgcacgaaaaagttatgcagacacta
cgggagctgcgctttactcacatgactcctgtgcagtctgcagctatccctttatttatg
agcaataaagacattgcggctgaagcgataactggcagtggcaaaacattagcttttgta
attcccttgttggagatccttttaaggcgggaagaaaaattaaagaaaatgcaggttgga
gccatcatcataactcccacaagggaacttgcgattcagatcaatgaggtcctctcacat
ttcacaagacatttcccccagtttagtcagatacttctaattggtggtagtaatccagca
gaagatgtagaaaagtttaaggaacatggtgggaacatcattgttgccacaccaggccgc
ttggtggacatgttcagaagaaaagcagatggcttggatttggccagttttgtgaaagca
ctggatgtcctggttctggatgaggcagacagacttctggacatgggatttgaagccagt
ttaaataccatcttggagtttctacccaagcagaggcgaacaggcttattctcagctact
caaacccaggaagttgagaacctggtaagagcaggcctccgaaatccaatacgcattaca
gtgaaagagaaaggggtggctgcaagcagctgccagaagacacccactcgccttcaaaac
tactacatgatatgcaaagcaaatgaaaaatttaaccaccttgtggccttccttcgccag
cgcaagcaggaaaaacatctcgtcttcttcagtacgtgtgcttgtgtggaatattatggg
aaagccttagagagcttcataaaaaatgtgaaaattatgtgtattcatggaaaaatgaaa
cacaaacggaacaagattttcacagaatttcgacagttgccaagtggaattttagtgtgc
actgacgtgatggcacgtggtatagacattccagaggtaaactgggttttgcagtatgat
cctccaagcagtgccagttcctttgttcatcgatgcggaaggactgccagaattggccat
cacggtagcgctctcgtgttcttacttcccatggaagagtcctacatcaatttcctctcc
ataaaccaaaaatgtccaatgcaggaaatgaaaccgctgaaaaattcggtagaccacctt
cccaagctgaaatctctggctttagctgacagagcaatgtttgagaaaggaatgaaagct
tttgtgtcatatgtacaggcctatgcaaaacacgaatgcagtcttatcttcagagtcaaa
gatcttgactttgccagtctggcacaagggtttggattgctgaagatgccaaaaatgcca
gaactgaaagggaagaatgtttctgactttactcctaccaatattgacacagactctatt
gcatacaaagataaaaacagagaaaaactgaggcggaaagtgctagaagaacacaagaag
caacagcgcgagagcagagagcaaaagaaattctgcaagaacaaagcttggtcaaaacag
aaagccaaaaaagaaaagaggaaaaaggttgctgagaaaaggaaacaagaggagggcttc
gaaatggaagaggaggacctggatgatctgctaaatgacacaagacttttgaaaaaactc
aagagaggtaaaatcagtgaggaggaatttgagaaacagtttttgcacagtaaaaggaag
gtggaggatgaagatgctgatgactga
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