Geotrypetes seraphini (Gaboon caecilian): 117365005
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Entry
117365005 CDS
T09159
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117365005 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117365005 (ARID1A)
03021 Transcription machinery [BR:
gsh03021
]
117365005 (ARID1A)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117365005 (ARID1A)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Helix-turn-helix
ARID
117365005 (ARID1A)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117365005 (ARID1A)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117365005 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117365005
NCBI-ProteinID:
XP_033810702
UniProt:
A0A6P8RYI9
LinkDB
All DBs
Position
8:5052824..5178832
Genome browser
AA seq
2190 aa
AA seq
DB search
MMAAQVASAVAASSLGNPPSELKKAEREGPEEAVAAAAVEAAEQRGDAKAGPEEAKELLH
DGAESNGAEPELKSPRPPANPEAADGPGAPPAAALAPPAYGFGPAQPQHYGRGPAFHQHG
GQQSPGMAALPSGLEPAPYPAEHGFANHAYNSYPPYPNRSAYPPQGYPRPAKYPPQRFAG
MGGPGTPAPTATPTLNQLLTTPTSARGYPAYSAPDYGGGGGGGGGGAPEPGPPKSGAGAE
LAAQCWGPATAAAGGAQQRSHHAPMSPGSSGQPLPRTPQPSSPMDQMGKMRPQPYGASNP
YTQQQGPPSGPQQGHGYPGQPYGPQTPQRYPMGMQGRTQGSMGSISYAQQIPPYGQQGPG
GYGQQGQSPYYNQQSPHPQQQPSYAQQVPSQTPLSQSPYPQPQQPQSQPQQLQSSQSAYS
QQQSQPPLQQSQSPYTQQQQQQQQPTAQTQPQQHTQSQPPYVQQQSQTPYPQQQQPAVPS
AHSQQSSYPQPSPQQQPQSAYSQQRFPPAQELSQDSFGSQASTPSMASSKGGQDDLNLSL
QTRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGESNPAQSPFSPHTSPHLPGIR
GPSPSPVGSPASVAPSRSGPLSPATVPVSQMPPRPPSGQSDTIVHPSLNPSSLSQDRGYI
QRNPQMPQYGSPQPSSALSPRQSSGGQMHAGMSPYQQNSMGSYGPQSGQYGPQGGYSRQP
NYNAMPNANYSSPGMGGGMNPMGASSQMHGQTGVPQYSGLPPGRMSHAAMGNRPYGPNLG
NMPPQVGSGMCPPPGGMNRKAQEAAAAMHAAANSIQNRSPGYPNINQGGMMGTGPPYGQG
INTMAGMMNPQGGPYSMAGNMANNTAGMTASPELMGLDVKLTQAPKMNNKADGTPKSESK
SKKASSSTTTNEKITKLYELGVEPERKMWVDRYLSFTEEKAMGMTNLPAVGRKPLDLYRL
YVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPP
PDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMA
PMPGIRNNSVGLQDVFPDGSDPTFPKRNSMTPNPGYQPGMNTSDMMGRMPYEPNKDPYGS
MRKGGDPFLSSGQGPNSGIGDPYNRTAGPGMGNMVMGQRQHYPYGGPYDRVRTEPGMGTE
TNMGTGTAQGSMMSSNPDSGMYSPNRYPQQQQQRHESYGSQFPTQGTPSASPFPSQQTAM
YQQPQQNYKRPIDGTYGPPTKRHEGDMYNVPFSSGQGQQQQQQPPQAQPVAQSQQPSQPQ
TPQPSPQQDIYNQYSNTYPAATDRRPVTGPQNQFPFQFGRDRVSAPPGSNTQQAMPPQMM
ASPMQSTPEGPQQGGSIWQGRNEMGYNYANRQGPSTAPQGPGYHGVNRTDDMLHTDQRLN
HEGQWPSHVNRQPPYNSSAPVPPITRPPQSTYQTSSSMQNHIPQVSSPAPIPRPLENRTS
PSKSPFLHSSMKMQKAGPPVPASHITPTSVQPPLIRRDITFPPGSVEVSQPVLKQRRRLT
MKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYF
RRCLIEIFGILKEYEVGDPGQKTLLDPDRFSTVPSPTLSEEEEMEEEELQDTNEEMGELS
PDCEEEEIEEEEVAFAIKEKAPLEDSEENLKQASKFDKLPVKIVQKNDPFVVDYSDKLGR
VQEFDSGLLHWQIGGGDTTEHIQTHFESKLELMAVRKRASPSATLKKCSTKTNLAVKVEE
NFIPDGPVEKSITATIDDVLLARPGSLTEEGVKNSEANKASGKFPFGISPVQTHRNIKIL
EDEPHSKDETPLCTVLDWQDSLSKRCVCVSNIMRSLSFVPGNDFEMSKHPGLLLILGKLI
LLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSP
YPESICLPILDGLLHWAVCPSAEAQDPFLTLGPNAVLSPQRLVLETLSKLSIQDSNVDLI
LATPPFSRLEKLYSTLVRFLNDRKNHVCREMAVVLLANLAQGDNLAARAIAVQKGSIGNL
LGFLEDSLAATQFQQSQASMLHMQNAPFEPTSTDMMRRAARALLALAKVEENHSEFTLYE
SRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6573 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggcgcaggtcgcctccgccgtcgccgccagcagcctgggcaacccgccgtcg
gagctgaagaaagcggagcgggagggcccggaggaggcggtggcggcggcggcggtggag
gccgccgagcagcgcggggacgccaaggccgggccggaggaggccaaggagctgctgcac
gacggcgccgagagcaacggggccgagccggagctgaagagcccgcggccgcccgccaac
cctgaggcggccgacgggccgggggcgccccccgccgccgccctggcgcctcccgcctac
ggcttcggcccggcccagccccagcactacggccggggccctgctttccaccaacatggc
ggacaacaaagccctggcatggcagcgctgccgagcggcctggagccggcgccctacccg
gccgagcacggcttcgccaaccacgcctacaactcgtaccccccgtaccccaaccgcagc
gcctacccgccgcagggctacccccggcccgccaagtacccgccgcagcgcttcgccggc
atggggggcccgggcaccccggcgcccaccgccacccccaccctcaaccagctgctcacc
acccccacctcggcccggggctacccggcgtacagcgcgcccgactacggaggaggagga
ggaggaggaggcggcggggccccggagccggggccccccaagagcggggcgggggccgag
ctggccgcccagtgctggggccccgccacggcggccgcaggaggcgcccaacaaaggagc
caccacgcgcccatgagccccggcagcagcgggcagcccctgcccaggacgccgcagcct
tccagcccaatggatcagatgggcaagatgagacctcaaccatatggtgcaagtaatcca
tatacacaacagcagggacctccatcagggccacagcagggacacggctacccaggtcaa
ccctatggaccacagactccacaacgatacccaatgggcatgcagggaaggacacagggt
agcatgggtagcatctcctatgcacagcagattcctccatatggacagcagggccctggt
gggtatgggcagcagggccagtctccctattacaaccagcaaagtcctcatccgcagcag
cagccttcgtatgctcagcaggtgccatcccagacccctctgtcccagtctccttatcct
cagccacaacagcctcagtctcaacctcaacagctgcagtcctcacagtctgcatattcg
cagcagcagtctcagccccctcttcaacagtctcagtctccatatacccagcagcagcag
cagcagcagcagcccacagcacagactcagccacagcaacatacacagagccagcctccc
tacgtccaacagcagtcgcagacgccctatccacagcagcagcagccagcagttccttca
gctcattctcagcaatcttcgtaccctcaaccatcacctcagcagcagccacaatctgca
tattcccaacaacgcttcccacctgcacaggagttatcacaagattcctttggttcccag
gcatctactccctcgatggcatccagtaaaggaggacaagacgacttgaacctgagtctt
cagacacgtccatctagtttgccagacctgtcgggttcaattgacgatttgcccatgggt
acggaaggagcgctaagtcctggagtgagcacttcgggaatttccagcagccaaggagaa
agtaatccagcccagtctccgttctctcctcacacctctccccacttgccaggaatccgt
gggccctcgccatctcctgtgggctctcccgccagtgttgccccatctcgttctggaccc
ctttcaccggccacagtgccagtcagccagatgccacctcgaccaccgagcggtcaatcg
gacaccatcgttcacccttccttgaatccatctagtctgagtcaagaccgaggatacata
cagaggaatcctcagatgccccagtatggatctcctcagccaagctctgccttatcgcca
aggcagtcctctggaggtcagatgcatgctgggatgagtccatatcagcagaactccatg
ggaagctatggaccccagagtggtcaatatggaccacaaggaggttattccaggcagcca
aactacaatgccatgcccaatgccaactactcaagtccaggaatggggggtggcatgaac
cccatgggagctagtagccagatgcacggacagactggtgtgccccagtacagtggttta
ccacctgggaggatgagccatgcagcgatggggaatagaccatatggacccaatctggga
aatatgcctccacaagtgggctctggaatgtgtccccctcctggggggatgaaccggaaa
gcacaagaagcggctgctgcaatgcacgctgcagccaactctatccaaaacagatcgcct
ggctacccgaacataaaccaagggggaatgatggggactggaccaccttatggacaagga
attaacactatggcagggatgatgaatccacagggtggcccatattccatggcgggtaac
atggccaacaatacagcaggaatgacagccagtcctgaactgatgggccttgatgtcaag
cttacacaggcaccaaaaatgaacaataaggctgatggcacaccaaaatcggaatccaaa
tctaagaaagctagttcttctaccaccaccaatgagaaaattaccaagctgtatgaacta
ggggtggagcctgagaggaagatgtgggtggaccgttatctgtccttcactgaagagaaa
gccatgggcatgaccaatctcccagctgtggggagaaagcctctagatctgtacaggctc
tatgtctctgtgaaggaaattggaggattgacacaggtcaacaagaacaaaaaatggaga
gagttggctactaatttgaatgttggcacatccagcagtgctgccagttccctaaagaag
cagtatatccagtgtctttatgcctttgaatgcaaaatcgaaaggggtgaagatcctcca
ccagacatctttgccgctgctgactccaagaagtcccaaccgaaaatccagccaccttct
cctgcgggatcaggttccatgcaaggtcctcagacccctcagtctactagcagctctatg
gcagaaggaggagacttgaagccaccaactcctgcatctacaccacacagtcaaatggcc
cccatgccaggcattaggaataactctgtaggactccaggatgtgtttcctgatggcagt
gatcccacgtttccaaagcgcaattctatgacgccgaaccctggatatcagcctggcatg
aatacctcggatatgatgggacgtatgccctatgagccgaataaggatccttatggcagc
atgaggaaaggaggtgatccattcttgtcctctgggcaaggcccaaatagtggcatagga
gacccttacaaccgcactgcaggaccagggatggggaacatggtgatgggacagcgacag
cactatccgtacggaggcccttatgatcgagtgaggacggaacctggaatgggaacggag
actaatatgggaacgggaacagcacagggcagtatgatgtcttcaaacccggactcgggg
atgtactctcccaaccgctatccccaacagcaacagcaacgacacgagtcttatggcagt
cagttccccacgcagggcacaccctctgcgagcccattccccagtcagcagacagcaatg
taccaacagccacagcagaactacaaaaggccaatagatggcacttatggcccccctacc
aagcgacatgaaggggatatgtataatgtgccatttagcagtgggcaggggcaacagcag
cagcagcagcctccacaagcacagcctgtggctcagagccagcagcccagccaaccccag
acgccacagccatcaccccagcaggatatatacaaccagtacagcaacacctaccctgcc
gccactgatcgacgacctgtcactggaccccagaaccagttcccattccagtttggcaga
gacagggtctctgctcccccaggctcaaatacccagcaagccatgccgcctcaaatgatg
gccagcccaatgcagtcaacgccagagggaccacaacaaggagggagcatatggcaggga
cgtaatgaaatggggtacaactatgccaacaggcagggtcctagtactgccccccaaggg
cctgggtatcatggagtgaatcgaacagatgacatgttgcatacagatcagaggctgaat
catgaaggacagtggccctctcatgtgaatcgtcaacctccctataactcctctgctcct
gtacctccaataacacggccacctcaatccacctatcagacctcttctagcatgcaaaat
cacattcctcaggtatccagcccagcacctattccccgacctttagaaaatcgtacctca
cccagcaagtctcccttcctgcactcgagcatgaaaatgcagaaggctggtccccctgtc
cctgcctcccatataacgcccacttctgtgcaaccccctctgatacgacgagacatcacc
ttccctcctggatctgtagaagtctcacaacctgtgttgaaacagaggcgacggttgaca
atgaaggatattggaacccctgaggcatggagagtgatgatgtcactcaagtcggggctg
ttggctgagagcacatgggccctggataccattaacatcttactgtatgatgacaacagt
atcatgacatttaacctcagccagctgccaggattgcttgaacttctagtggagtatttt
cgccgttgcctgatcgagatctttggcattctgaaggagtatgaagtgggagatccagga
caaaagacccttctggatcctgaccgattcagcacagttccaagccccactttgtcagaa
gaggaggagatggaggaggaagagctgcaggatacaaatgaggaaatgggggagctgagt
cctgactgtgaggaagaagagattgaggaggaggaagttgcatttgcaattaaggaaaaa
gcacctctagaggatagtgaagaaaatctaaaacaagctagtaaatttgataaactcccc
gtgaagatagtacagaaaaatgacccatttgtcgtagattactctgataagctaggacgt
gtgcaggagtttgacagcggcttgctacactggcagataggtggtggagacaccacagaa
cacattcaaactcatttcgagagcaaactggagctgatggcagtccgtaaacgtgcttcc
cccagtgccaccttgaaaaagtgttcaactaaaaccaatctagcagttaaagtggaggaa
aactttataccggatggcccggtagagaaaagtataactgctactattgatgatgtgctt
ttagcacggccaggttcactgactgaggagggggtcaaaaattctgaagccaacaaagca
agtggcaagtttccatttggtattagtccagtgcaaacgcatcgaaacattaaaatcctg
gaggatgagccccacagcaaggatgagaccccattgtgtaccgtactggactggcaggac
tctctatccaaacgctgtgtttgcgtctccaacatcatgaggagtttatcttttgtgcct
ggaaatgactttgagatgtcaaaacatccaggtctgctgctgattcttgggaaactgatt
ttgctgcatcacaagcatcccgagcgcaaacaggcaccactgacctatgaaaaggaggag
gagcaggaccaaggggtgagctgcaacaaagttgaatggtggtgggactgcttggagatg
ctacgtgaaaataccctagttactctggccaacatttctggccagctggacctctcccca
tacccagaaagcatttgtctgcccatcttggatggactcctccactgggcagtttgtccg
tcagctgaagcccaggaccctttcctcaccctgggcccaaatgctgtcctttctccccag
agactggtcttagaaacactcagcaaactcagcatccaggacagcaatgtggatttgatt
cttgccacgcctcccttcagtcgtttggagaagctgtacagcacgctggtgcgttttctg
aacgaccgaaagaaccacgtgtgtcgagagatggctgtggtattactagccaacttggca
cagggagataacttggcagctagggcaattgccgtgcagaagggcagcattggcaatttg
ttgggttttttggaggatagtctggcagcgactcagtttcagcagagccaggctagtatg
cttcacatgcagaatgctccctttgagccaacaagtacggacatgatgcggcgggcagct
cgtgccctgcttgccttagccaaggtggaagagaaccactctgagttcacattatatgag
tcacgcctgttggacatctctgtctcgcctttgatgaactcgctggtttcacaagtgatt
tgtgatgtactgtttttaattggccaatcatga
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integrated database retrieval system
