Geotrypetes seraphini (Gaboon caecilian): 117365087
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Entry
117365087 CDS
T09159
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03030
DNA replication
gsh03410
Base excision repair
gsh03420
Nucleotide excision repair
gsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117365087 (RFC5)
03410 Base excision repair
117365087 (RFC5)
03420 Nucleotide excision repair
117365087 (RFC5)
03430 Mismatch repair
117365087 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsh03032
]
117365087 (RFC5)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117365087 (RFC5)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117365087 (RFC5)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117365087 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
117365087 (RFC5)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
117365087 (RFC5)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117365087 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
117365087 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_24
AAA_11
AAA_assoc_2
AAA_22
RuvB_N
AAA_14
ResIII
AAA_16
DEAD
DUF815
AAA_7
PhoH
ATPase_2
AAA_19
AAA_5
AAA_30
TIP49
AAA_2
DNAX_ATPase_lid
Thioredoxin_6
Mg_chelatase
nSTAND3
AAA_28
Motif
Other DBs
NCBI-GeneID:
117365087
NCBI-ProteinID:
XP_033810911
UniProt:
A0A6P8S1N1
LinkDB
All DBs
Position
8:189237689..189324414
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AA seq
334 aa
AA seq
DB search
MASTSRAALQRRNLPWVEKYRPKTLNDLISHQDILNTIQRFISEDKLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLNPELMVPRL
EYVVEQESVDISADGMKALVTLSNGDMRRALNILQSTNMAYGKVTEETVYTCTGHPLKAD
IANILDWMLNKDFTTAYKNILNLKTLKGLALHDILTEVHLFVHRVDFPPSVRIHLLRKMA
DIEYRLASGTSEKIQLSSLIAAFQVTRDMIAAEA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacgagccgagcggccctgcagcgccgcaacctaccctgggtggagaaatat
cgaccaaagacactgaatgatttgatctctcatcaggacatcctgaacacaattcagagg
ttcattagtgaagacaagctgcctcacctactcttctatggccctcctggcactgggaag
acctccactatcctagcttgtgcaaagcagctttacaaagacaaggaattcagctccatg
gtactggagttgaatgcttctgatgacagaggaatagacattgtccgaggacccatactt
agctttgccagcacaaggaccatatttaaaaaaggttttaaacttgtgatcttggatgaa
gcagatgctatgacccaggatgcccagaatgcactgagaagagtgatagagaaattcacg
gaaaataccaggttctgcctgatctgcaattatttatcaaagattatccctgcattgcag
tcccggtgcacacggttccgctttggcccgctgaacccagagcttatggtaccaaggctg
gagtatgttgtggaacaggaaagtgttgacatcagtgctgatggcatgaaggctttggta
acactttctaacggagacatgcgcagagctctgaatattttacagagtacaaacatggca
tatgggaaagtgactgaagagacagtgtacacctgcacagggcatcccctgaaggctgac
attgccaacattcttgattggatgctgaacaaagacttcaccactgcctataaaaatatc
ttgaatttgaagaccctgaaggggctggccttgcatgacattttgacagaagttcacctg
tttgtacacagagttgattttccaccttcagttcgaatccatttactgaggaagatggcg
gatattgagtatagactggcctcggggacaagtgagaagattcaattgagctcccttatt
gctgcgtttcaggtcacccgagatatgattgcagcagaagcttaa
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integrated database retrieval system
