Geotrypetes seraphini (Gaboon caecilian): 117365714
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Entry
117365714 CDS
T09159
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03015
mRNA surveillance pathway
gsh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117365714 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117365714 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117365714 (SYMPK)
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117365714 (SYMPK)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117365714 (SYMPK)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117365714 (SYMPK)
U7-dependent histone pre-mRNA processing factors
117365714 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
117365714
NCBI-ProteinID:
XP_033812329
UniProt:
A0A6P8S378
LinkDB
All DBs
Position
8:3803480..3937309
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AA seq
1294 aa
AA seq
DB search
MASRSENIVCMSVASQFFTQDDGVDNMTTTERVVDLLNQAALISTESKLTILKQVQELII
NKDPSLLDNFLDEMIAFQADKSIEVRKFVIGFIEEACKRDNELLLKLIANLNMLLRDENV
NVVKKAILTMTQLYKVALQWMVRSRVINDKQDSCWEMVSDMVNDINQLLDSDNDGIRTHA
IKFIESLIITLSPRMPDSDVPKRQENDISLDRVPKDHPYIKYDILCEYGKAALEQLLKFM
VHPAISSINLTAALGSLATIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKL
HLLSVLKHPSSVEFHNQITTLLLDLGTQQQEIARNMPNLKESRKRPRDETEQGLKKIKMD
TPLVEDDEDKDLEVMPAMSAKSSAQSAQTDTDITAEFLQPLLTPENVANLVLISMVYLPE
TMPASFQATYTPVESAGTDVQIKHLARLMATQMTSAGIGPGVEQMKQQKVEQKEEKISKP
ENLPIIRRMYSLTQGQAISVVGSGATVNLQEKIQTKRWPEPIIPAAPMRMVGTGIRKKIF
RLNDVIKALTDVQIDNLKLNAVRRILQSERAVACSGAAQVRVKILSRMVLEFDEILKSEV
LSFILEDMRNRIDLAFAWLYQEYNAYLSHFPDGSPDDYDECLIGLLAGLQERPDQKDGVF
SRLVLEAPLITDTALEVIRKYCEDESRSYLGMSTLRDLIFKRPARQFQYLHVMLDLCSHE
KDKVRQQALTFIKRMYEREQLRDYIEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTE
ETEKQCLYLYLALLPQNHKLIHELASVYTEAIADIKRTVLRAIDQPIRGMGMNSPELLLL
VENCPKGAETLVTRCLHILTDKAPPSPELVKQVRDLYQKRLPDVRFLIPVLNGLEKKEII
QALPKLIKLNPIVVKEVFNRLLGTQHGEGNSSVSPLNPGELLIALHNIDSTKCDMKSIIK
ATNLCFGERNVYTSEVLAVVMQQLMEQNPLPILLMRTVIQSLTMYPRLGGFVMNILSRLI
MKQVWKYPKVWEGFIKCCQRTKPQSFQVLLQLPPPQLSAVFEKCPELREPLLAHVRSFTP
HQQAHIPSSIMVILEASSKQELQTDLPQMEEEDKEQIVASRPASQEMIAVRLAQEKALKR
QLEEEQKLKQPRKTTVPPTPSLEEIMDFREEGPEVETPTIFISMEEESNLAEPSQDKTIS
AKISVQPALPTMSLDRKSPEVEQGNTQEKASSVPDSPNKESNTTKEAVNGATTTADGNVN
EAKGKSPETTAEDILPAEQSEELMDQDTVEKQES
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaggagcgaaaacattgtgtgcatgagtgtagcatctcagttcttcacccaa
gatgatggagttgacaacatgaccaccacagagagggtagttgacttgctgaatcaggca
gcattgataagcacggagtccaaactgaccatcctgaagcaggtccaagaattgattata
aacaaagatcccagcctcttggataactttttggatgagatgatcgctttccaggcagac
aagtccattgaggtgcgcaagtttgtgattggatttatagaagaggcttgcaaaagggac
aatgagcttctgttgaaactgattgccaatctcaacatgctgcttcgggatgagaatgtg
aatgttgtaaagaaggcgattttgaccatgacccaactctacaaggttgcattgcagtgg
atggtgaggtccagagtcatcaacgacaagcaggattcttgttgggagatggtgtctgac
atggtgaatgacatcaatcaattgctggattcagacaatgatggtatccgcactcatgcc
atcaaatttatagagagcctgattattacgctatccccccgcatgcccgactctgatgta
ccaaagcgtcaggagaatgatataagcctagaccgcgtccccaaagatcacccctacatc
aaatatgacatcctgtgtgagtatggcaaagctgctctggaacaactactgaagttcatg
gttcaccctgccatttctagcatcaaccttacagcagcactgggatccttggcgaccatt
gcacggcagagacccatgtttatgtcagaggtcatccaggcttatgagacactgcatgca
aacctgcctccaacactggccaaatcacaagtgagcagtgtgaggaagaatttgaaatta
cacctgttgagtgtgctgaaacacccatcctctgtggagtttcacaaccagattaccacc
ctcctgcttgatttgggcacacagcagcaggagattgcacgtaatatgcccaacttaaag
gagtcacgcaagcgtccacgagatgagacagagcaggggctaaagaagataaagatggac
actcctcttgtagaagatgatgaagacaaagacttggaggtcatgccagcaatgtctgcc
aaatcttctgctcagagtgcacaaactgatacagatattacggcggagttcctgcagccc
ttgttgacacctgagaatgtggcaaacctggtcttgatcagtatggtgtatctgccagaa
actatgccagcatctttccaggccacctacacccctgtggaatccgctggcaccgatgta
cagatcaaacatcttgccaggctcatggccacccaaatgacctctgctgggattggacca
ggagtggaacaaatgaagcaacagaaagtggagcagaaagaggaaaagatctccaaacct
gagaacttgccaataatacgtcgcatgtactcattaacccagggtcaggccatttctgtt
gtgggctcaggtgcaacagtaaatttgcaggaaaagatacaaaccaaacgctggccagag
cccatcataccggcagcacctatgaggatggttggcacaggaatccgtaaaaagatattc
cggctgaatgatgtcattaaggcactcacagatgtgcagattgacaacttaaagctgaat
gctgtaagacggatcttacaatctgagagagctgtggcctgcagtggggcagctcaggtg
cgtgtgaagatcctgtctcgcatggtgcttgagtttgatgagatactgaagagtgaggtg
ttgtcctttatcctagaggacatgcgaaaccgcattgacctagcctttgcctggctgtac
caggagtacaatgcctatctcagccatttccctgatggatctccagatgactatgatgag
tgtctcattgggctgctggcaggattacaagagaggccagaccaaaaggacggggtattc
agccgtttggttcttgaggcacctttgatcacagatactgcactggaagtgattcggaaa
tactgtgaagatgagtctcggtcttatcttgggatgtccaccctgcgtgatctgattttt
aaacgtcctgccaggcagttccagtacctgcatgtaatgctggacctctgttctcatgag
aaagacaaggtacgacagcaggcactaaccttcattaagcgtatgtatgagagagaacaa
ctacgagattatatagagaagttcgctttgaattatctacagctgctggttcatcctaac
ccaccatctgtgctgtttggagcagacaaggacacagaggtggctgcaccctggacagag
gagactgagaaacagtgcctatacttgtacctggctctcctgccgcagaaccacaagctg
atccatgaactggcttctgtgtacaccgaggctattgcagacattaaacgcactgtgcta
cgtgccatagaccagccaatccgtggaatgggtatgaactctcccgagcttctgctacta
gtggaaaactgcccaaagggtgcagagaccttggttactcgctgtttgcacatcttgact
gataaagcacctccctctccagaacttgtaaagcaagtgcgagatttgtaccagaaacga
ctcccagatgtccgcttcttgatccctgtcctcaatgggcttgaaaagaaagaaatcatc
caagctctgccaaaacttatcaaactgaatcccatcgtggtaaaggaagtgtttaaccgc
cttctaggaacacagcatggagaaggaaattcatctgtttcacctttgaaccctggagaa
ttactaattgctctgcataatattgactccacaaaatgtgacatgaagtctataatcaaa
gccactaacctgtgttttggggagcggaatgtgtacacatctgaagtgcttgcggtagtg
atgcagcagctgatggaacagaatcctttgcctattttgctgatgagaacagtcatccag
tccttgacgatgtatccacgcctgggtggatttgtcatgaacatcctctcacgcctcatc
atgaagcaggtgtggaagtacccaaaagtttgggaagggttcattaaatgttgccagcgt
accaagcctcagtccttccaggttttgctgcagctgccaccaccacagctctctgctgtt
tttgagaaatgtcctgaactacgtgaaccactgctggctcatgtgcgctctttcacacca
catcagcaagctcatattcccagctctatcatggtgatcttggaggccagcagcaagcaa
gaattgcaaacagacttgccacagatggaggaggaggacaaggagcagatagtggcctca
cggccagcatctcaggaaatgattgcagtgcgcttggcgcaggagaaagcactgaaacgg
cagctggaggaggagcagaagctgaaacagccccggaaaaccactgtgccccccactcct
tcattggaggagattatggatttccgggaggaggggcctgaggtggagacgcccactatc
tttatcagcatggaggaggagagtaacttggcagagcctagccaagataaaaccatctca
gcaaagatatctgtgcagccagcgttgcccaccatgtccttagacaggaagagtcctgag
gttgagcaaggcaacacgcaggaaaaggcaagcagtgtcccggattccccaaataaggag
tcaaacaccaccaaagaagcagtcaatggtgctactaccacagcagatggcaatgtaaat
gaggcaaaaggcaaaagccctgaaaccactgcagaagacatactcccagctgagcaatcg
gaagaactaatggatcaggacacggtggagaagcaagagagctga
DBGET
integrated database retrieval system
