Geotrypetes seraphini (Gaboon caecilian): 117365880
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Entry
117365880 CDS
T09159
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03082
ATP-dependent chromatin remodeling
gsh03083
Polycomb repressive complex
gsh04110
Cell cycle
gsh04330
Notch signaling pathway
gsh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117365880 (HDAC1)
03083 Polycomb repressive complex
117365880 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117365880 (HDAC1)
04350 TGF-beta signaling pathway
117365880 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117365880 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gsh03036
]
117365880 (HDAC1)
Enzymes [BR:
gsh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117365880 (HDAC1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
117365880 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
117365880 (HDAC1)
BRAF-HDAC complex
117365880 (HDAC1)
REST complex
117365880 (HDAC1)
SHIP complex
117365880 (HDAC1)
MiDAC complex
117365880 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
117365880 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
117365880 (HDAC1)
Chromatin remodeling factors
NuRD complex
117365880 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
117365880
NCBI-ProteinID:
XP_033812693
UniProt:
A0A6P8S6Q0
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All DBs
Position
8:26023303..26051126
Genome browser
AA seq
480 aa
AA seq
DB search
MALTQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGG
GGYTIRNVARCWTFETSVALDAEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLE
KIKQRLFENLRMLPHAPGVQMQGIPEDALPDDSGDEDEEDPDKRISIRSSDKRIVCDEEF
SDSEEEGEGGRRNISNYKKAKRCKTEEEKPGEERSDVKEEEKGREEKLEPKRLKEETKLS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgactcaaggaacaaagaagaaagtctgttactactacgacggggatgttgga
aattactactacggacaggggcatcccatgaagcctcaccgcattcgaatgactcacaat
ctcttgctcaactatggtctctacagaaaaatggaaatatatcgtccacacaaggcaaat
gcagaagagatgactaagtaccatagtgatgattacatcaagtttctacggtccatccgc
ccagataacatgtcagaatacagcaagcaaatgcagagatttaatgttggagaagactgt
cctgtgtttgatggtttgtttgaattttgtcagctctccaccggtggctcagtggccagt
gcggttaaactaaacaagcagcagacagacatagctgtgaattgggccggaggccttcat
catgccaagaagtccgaagcttctggcttctgctacgtgaatgatatagtcttggccatt
ctggagctgttgaagtaccaccagagagtgctgtatatagacattgatattcatcatggg
gatggtgtggaggaagctttttacaccacagatcgagtcatgacggtgtccttccacaag
tatggcgagtacttccctggcacaggagatctgcgggatattggtgctggaaaggggaaa
tactacgccgtaaactaccctctcagggatggaattgatgatgaatcctatgaggccatt
tttaagccggtgatgacaaaagtgatggagatgtaccagcccagtgctgtggttctgcag
tgtggagctgattctctttctggagacaggctgggatgcttcaatctaaccatcaaaggt
catgcaaagtgtgtggaattcataaagacctttaacttgccattattgatgctggggggt
ggtggctataccatccgcaacgtggcccgctgctggacctttgagacttcggtggctctg
gacgcagagattccaaatgagctgccatacaacgattactttgaatactttggaccagat
tttaagcttcacatcagtccatcaaacatgaccaaccagaacaccaatgattatctggag
aagatcaagcagcgtctctttgagaacttgcgaatgctccctcatgccccaggggtgcag
atgcagggcatcccggaagatgcacttccagatgacagtggagatgaagacgaggaagat
cctgacaaacgcatatcaattcgctcttctgataagagaatcgtctgcgatgaagaattc
tccgactcggaggaggagggagagggagggcgtcgaaatatttccaattataagaaagca
aagcgatgtaaaactgaggaggagaagcctggcgaggagaggagtgatgtgaaagaggag
gaaaaagggagagaagagaaactggagcccaagaggttgaaggaagagacaaagctgtct
taa
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