Geotrypetes seraphini (Gaboon caecilian): 117365974
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Entry
117365974 CDS
T09159
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 isoform X1
KO
K13174
THO complex subunit 5
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03013
Nucleocytoplasmic transport
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117365974 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
117365974 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117365974 (THOC5)
03041 Spliceosome [BR:
gsh03041
]
117365974 (THOC5)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117365974 (THOC5)
Spliceosome [BR:
gsh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117365974 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
EME1-MUS81_C
Motif
Other DBs
NCBI-GeneID:
117365974
NCBI-ProteinID:
XP_033812868
UniProt:
A0A6P8S7A7
LinkDB
All DBs
Position
8:180852919..180949585
Genome browser
AA seq
694 aa
AA seq
DB search
MSDSGKKRKPKVIRTDGGPQEGKRSRPDSEQEGRYYSEEAEVDSRDPSKDYELYKQTCQE
LQRLMAEIQDLKSKGNKDNAAEIEEKRIQSCVHFMNLKKLNRLAHIRLKKGRDQTHEAKQ
KVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSVEEFYQEAPVEISKPDFTVG
DLHQQTLSRLDWELEQRKRLAEKYKECQASKEKILKDIEVKKEYLSSLQPRLNAIMQASL
PVQEYLAMPFDQAHKQYEIAQHLPPPLYVLFVQASSYSQACAQMKHSSQPCRQDKKLTVT
IEGSVEEAKALFKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVS
LNLKCKDNSILQLAFYYLMNLNIMTVQSKVTTALDLATAISAGDLLSPDSLLSCLYPGDH
GMKTPNPANLYQFDKVGILTLSDYVSELGHPYSWVQKLGGLQFPKDQPQFVVTADNSLSA
SHMEKTMKLLRTRLLSRLALHKQFSSLEHGIVPVASECQHLFPTKIMSRLVKWSAITYED
YKDLSFTTEVMEAELAEDTHMYFSAVIERGTAKLQAVLAMNPGYCAIPPIFSLCLHWKGE
RSSSNDDNIRALESEVNVYYKELCGPKPGYQLLTNQLQRLCMGLDVYLETESHDNSVEGP
KEFPQEKMCLRLVRGPNRLKPFKFNFPQGFFSHR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattcaggtaaaaaaagaaaaccaaaggttattcgcacagatggaggtcctcag
gaaggcaagagaagcagacctgattctgagcaggaggggagatattacagcgaggaagcg
gaagtggattctcgtgaccccagcaaagactacgaactctacaagcaaacctgtcaggag
ttgcagagactaatggctgaaatccaggacctgaagagtaaaggcaataaagacaatgct
gccgagattgaggaaaaacgcatccagagctgtgtacacttcatgaacttaaagaagctg
aatcgcttggctcatatccgattgaaaaagggacgcgatcagacacacgaggcaaagcag
aaagtggatgcgtatcatctgcagctacagaacctgctctacgaagtgatgcatctgcag
aaagagatcaccaagtgtctggaattcaagtcaaagcatgaggagattgacctggtgagt
gtggaagagttctaccaagaggcacctgtcgagatcagcaaacctgactttacggtagga
gaccttcatcagcagaccctttctcgcctggactgggaactggagcagcgaaaaaggttg
gcagagaagtacaaggagtgtcaggccagcaaagagaaaatcctgaaggacattgaagtg
aaaaaagagtacctaagcagcctgcaaccccgccttaatgcaatcatgcaggcctcatta
cctgtgcaggagtacctggccatgccattcgaccaggcgcacaagcaatacgagatagca
cagcacctgccaccgcctctctatgtgctgttcgttcaggcgagttcctacagtcaggct
tgtgcccagatgaaacactcgtcccagccctgtaggcaggataagaagttgactgtcact
atagaagggagtgtggaagaagccaaggcactcttcaaacctcccgaggattctcaagat
gatgagagcgactctgatgctgaggaggaacagaccacgaaacgcaggcgtccaacattg
ggtgttcagctcgatgacaagcggaaagagatgctgaagagacatccgctttcagtctct
ctcaatctcaagtgcaaagataacagcatcctccagctggccttctattacctcatgaac
ctgaacataatgaccgtccagtccaaagtgacgactgctttagatctggccacggctatc
agtgcaggggatttgttgtctccagactctctcttaagctgtctttacccaggggaccat
gggatgaaaactccaaatccagccaatctttatcaatttgacaaagttggtattttgacc
ctgagtgattatgtgtccgagctaggacatccctacagctgggtgcagaaactgggtggt
ctgcagttccccaaagatcaaccccagtttgtggtgaccgccgataactccttgagtgcc
agtcacatggagaagaccatgaagttgcttcggacaaggctgctgtcccgtctggctctg
cacaaacagttctcttcgcttgagcatggcattgtgccagtcgccagtgaatgtcaacat
ctcttccccacaaagatcatgtcacgcctagtgaagtggagcgccattacctatgaagat
tacaaggatctgtccttcacaacggaggtcatggaagctgaattggctgaagatacacac
atgtacttttccgcagttattgagagaggaacagctaaactgcaggcagtgctggcgatg
aatcctggctactgcgccatcccgcccatcttcagtttgtgcctgcactggaaaggggaa
agaagctccagcaatgatgataacattagggccctagaaagtgaagtgaatgtctactac
aaggagctgtgtgggcccaagccaggctaccagctcctgaccaaccagctgcagcgtctg
tgcatggggctcgatgtgtacctggaaacagaaagtcacgacaacagcgtggaggggccc
aaggagtttccccaggagaagatgtgcctacgcctggtcagaggtccaaatcgattgaag
cctttcaagtttaactttccccaggggttcttcagtcaccgctga
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