Geotrypetes seraphini (Gaboon caecilian): 117367065
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Entry
117367065 CDS
T09159
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117367065 (PDZRN4)
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117367065 (PDZRN4)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117367065 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_UBOX
zf-TRAF
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-rbx1
TRAF3_RING
PDZ_Tricorn
IBR_1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
117367065
NCBI-ProteinID:
XP_033815178
UniProt:
A0A6P8SET8
LinkDB
All DBs
Position
9:60939914..61732540
Genome browser
AA seq
1056 aa
AA seq
DB search
MGFDLDRFSEAVDANLQCKLCDKVLEEPLSTPCGHVFCAGCLLPWAAQKRLCPLRCQPIS
AEELHQVLPLRNLIRKLEIKCEHHRRGCGKLLRLRDSAEHAEMCDFSPAACRNGGCREVL
DLRDMDAHVRESCEHAAVGVCPEGCGLLLLRRDVLRGEHCCLRALRAQNGVLLGKRAGLE
QELRKQAARWGKREKSLLARLSALQNEVQLTALRSQKKFNEYMAHVGNITKNLASHCRGG
EPKPLTIVLQKESDSLGFNIIGGRPNQTNQEEASAEGIYVSKILPNGPADKVEGLQIHDR
IIEVNGKDLSKATHEEAVEAFRTAKEPIVVQVLRRAPINKSHGSSHEVQLMDVSTQTDIT
FEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPMEHEFYDGTEYLSSLPADADRTEDLE
CEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQ
DVQNREEAVALLSSDECKKIVLLVARPELQLDEGWLDDERNEFLEELNMEMLEEQHNEAM
QYTANEVDQSQKHEEEDGTTDTATSSSNNQEKDSGFVRTDESLHHDESSELENAPEEQNG
ISFENKREVEKSHDTLTSIELHCNESLVPGEYVDSDFVGNQDEECERFQQLLELKCKIRN
RGEYDLYYSSSTIECNTEVEQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVSDQYGD
IWTLHDGEFRNYNTSIDMQRGKLDDIVEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDS
SLQRMINITNRKNLRSTIMANQLSNGQIKREASLSKTIEQSNNAESMENILESSTFKDHE
KETIEQIPYLSPYHSSSYRFGNIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSP
KSTEPRMEWKVKIRSDGTRYITKRPVRDKLLKERALKIKEERSGMTTDDDTMSEMKMGRY
WSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEISIIELSHKKMMKKRN
KKILDNWMTIQELMTHGAKSPDGTKVHNAFLSVTTV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctggatcgtttctcggaagctgtggacgcgaacttgcagtgcaagctg
tgcgacaaagtgctcgaggagccgctctccaccccctgcgggcacgtcttctgtgcgggg
tgcctgctgccctgggcggcgcagaagcgcctgtgcccgctgcggtgccagcccatctcc
gccgaggagctgcaccaggtcctgccgctgaggaacctcatccggaagctggagatcaag
tgcgagcaccaccgcaggggctgcggcaagctgctccggctgcgggactcggccgagcac
gcggagatgtgcgacttcagcccggccgcgtgccgcaacgggggctgccgggaggtgctg
gacctgcgggacatggacgcgcacgtgcgggagagctgcgagcacgcggcggtgggcgtc
tgccccgagggctgcgggctgctgctgctgcgccgcgacgtgctgcggggcgagcactgc
tgcctgagggcgctgagggcgcagaacggcgtcctgctgggcaaaagggccggcctggag
caggagctgaggaagcaggctgcccggtggggcaagagggagaagtccctgctggctcgg
ctgtcggcgctgcagaacgaggtgcagctcaccgcgttgaggtctcagaagaagttcaac
gagtatatggcacacgttggcaacatcaccaagaatttagctagccactgtaggggagga
gaaccaaaaccattgactatcgtactacagaaagaaagtgattctcttggattcaatatt
attggagggcggcccaatcagaccaatcaggaggaagcttctgctgaaggaatttacgtc
tccaaaatcttgccaaatggacctgctgacaaagtggaaggccttcagattcatgaccgg
atcattgaggtcaacggaaaagatctctcaaaagccactcatgaggaagcagttgaagct
ttccgaactgccaaggaaccaattgtagtccaagttttacggagagcacccattaataaa
agtcatggaagttcacatgaggttcagcttatggatgtgagcactcaaacagacatcacc
tttgaacacatcatggctctggctaagctcagaccatccactccaccagtaccagatatc
tgcccttttctcttatcagacagctgccattctcttcacccaatggaacatgagttttat
gacggtactgagtatctttccagtttgcctgccgatgcggatagaacagaagacttggag
tgtgaggaggttgagctgtgtcgcgttagcagtcaagagaagctggggctgactgtctgc
tacagaacagatgatgaggaagacacggggatctatgtcagtgaggttgatccaaacagt
attgctgcaagagatggccgtatccgtgaaggtgatcgcattttacaaataaatggccaa
gatgtccagaatcgggaagaggcagtggcattgctctctagtgacgaatgcaagaaaatt
gtcttgctagttgcacgaccagaattgcagctggatgaaggatggctggatgatgaaagg
aacgaattcttagaggagttaaatatggaaatgttggaagaacaacataatgaagcaatg
cagtatacagccaatgaggtggatcagtcacagaagcatgaagaagaggatggcacaaca
gatactgcaacttcttcatccaacaatcaagagaaggacagtggctttgtgcgcacggat
gagagtctacatcacgatgagagttcagaactagaaaatgcacctgaggaacagaatggt
atttcttttgaaaacaagagggaggtggaaaagagtcacgacaccctaacaagcattgaa
ctgcattgtaatgaaagtcttgtgcccggagaatatgttgattcagattttgttggaaac
caggatgaggagtgtgagagatttcaacagttactggaacttaaatgtaaaatcaggaac
cgtggagagtacgatctttattattcaagcagcaccatagaatgtaacacagaagttgag
caagatggagttgagcatgaattgcaattgctcaatgaagaactaaggaatattgagctt
gagtgccagaacattatgcaggcccataggcttcaaaaggtgagtgaccaatatggagac
atctggacactgcatgatggtgaatttaggaattataataccagcatagatatgcagaga
ggtaagctggatgatattgtagagcaccccgagaaatctgacaaggacagctccagtgcc
tataacacagcagaaagttgcaggagcaccccactaactgtagaccgctcccctgatagc
tcactccagagaatgatcaacatcactaacaggaaaaatctaagaagtacaataatggct
aatcagttatcaaatggacaaatcaagagagaggcctctctaagcaagaccattgagcaa
agtaataatgctgaaagcatggaaaatatattggaaagtagtacattcaaagatcatgaa
aaagaaaccattgagcaaattccttatctctctccttatcatagttcatcatataggttt
ggaaatataccagctcatgcaagacattatcaaagttacatgcagctgatccaacagaaa
tctgcggtggaatatgctcaaagtcaacttagtttagtgagcatgtgcaaagactcacca
aagtcaacagagcctaggatggagtggaaagtgaaaatcaggagtgatgggacacgctat
atcacaaaaagaccagtgagagataaactgttgaaggaacgtgccttaaaaataaaggaa
gagaggagtggaatgacaacagatgatgatacaatgagtgaaatgaagatgggccgttat
tggagcaaagaggagaggaaacagcatctggtgagggccaaagagcagagaaggcggcga
gaattcatgatgcgtagtcggttggaatgtcttaaggaaagtccacagagtggcagtgag
ggcaaaaaggaaattagtattattgaactcagtcacaaaaaaatgatgaaaaagcgcaac
aagaaaattttggacaactggatgacaattcaggaactgatgacacatggtgctaagtct
cctgatggcaccaaagtacacaatgcctttttgtcagtgactactgtataa
DBGET
integrated database retrieval system
