Geotrypetes seraphini (Gaboon caecilian): 117367598
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Entry
117367598 CDS
T09159
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117367598 (SETX)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117367598 (SETX)
5.6.2.5 RNA 5'-3' helicase
117367598 (SETX)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117367598 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
Viral_helicase1
AAA_30
AAA_22
TniB
AAA_16
NAT10_TcmA_helicase
UvrD_C_2
HEAT_ULK4
Motif
Other DBs
NCBI-GeneID:
117367598
NCBI-ProteinID:
XP_033816184
UniProt:
A0A6P8SC33
LinkDB
All DBs
Position
10:complement(55027812..55184587)
Genome browser
AA seq
2799 aa
AA seq
DB search
MNTCCWCTPGRSFTIELIRKYSSKNLSSKDLVAANVDLCYCLECVVEYHKARDELAFLHK
DLWGLETSRLVAQFEKALFKDDEDEDELLLVEEDRETRLSGYTSPDFENSLRVPLLEILK
YPYLLLHEHLGELCVAALCKMEQVNQSFQVYDKHPGIYLLLVHPNEMIRRWAILTARTLG
KVDRDDYYDLQEVFTCLFKVIELGLFENPDIYSFSEIAKGKLVLLPPHLYDTKNYKNYWL
GICMLLSVLEEQAMDSLLLGPDKQNNFMQSILNTMVKKTDNDSTSPFWPALHCFMVILDQ
LGSKVWGQLIDPIEAFQNIINSPSYKNEIEHIRRSTIRMKCEPESNYSDDDIVSCSQIVY
NYNAEKPKKDAGWKSAICPDYCPNLYEEMQTLTNVLQSDIGQDMRVHNSTFLWFIPFVQS
VMDLKDFGVAYIVEVIHHLHSEIKDVLNRRVEHCDQVTEFFILILVSVIELHRNKKCLHL
LWVSSQKWVEALVKCAMLPARDFRRHVEKTSTHCSKITSTTSSPTPTSVNSQAANSVQYA
CLQLIRSLLREGCQLGQQSTCKKFLDILNHLLRSSSFQTLILNEQETNGLESCLKQVIKN
TKDRMSVMVSSPVEDNSGCKLSSSFFIKQENVEGDDYHMRAPSWNSSSLHQPSESRTNEV
CQRSLYASRNLSFQEGPLETCSKDSKVCSETEHPFAQGNSGVSRSFENLKISDKVVTTSR
NRDFQNTEQQESAKENAAENKSLSDDHISTSHQESASIGQSLWEGRHKEGTWGRESSNEL
DGEDSKPSSSLKCVIDSTKTKNLKTKLNTSSSQSRLSVVMDKFKNILKSKGANDTSDPDT
QSGQSKTMNMNPANMRNNQINSALCIKTTSETYAQQNCGNEEKPTNKILTVSLNPIKLES
DSLLKYSLSCTKLNETEKVSENDDVNSDTDDDVSLADIRNNLLKKCPTHFSNLPDTLGDK
VPEKVALNIEQAKLESLSSRKDKIRDYADTGSDSAQDDSGLAYRKVKNKYLKVDSMPMNR
KLDVSLCPLKSSDVDRNLDRLSLIAYAKGMNFPGDSSPETSASQLPDQVQRKMRVEGRFS
VGEQSNCSSSDIKTLYEPIVISDSSDEERMHTAVSNERDCPVKQPSTSTCSSVSLERNVK
DQIKVKCESLPMPCDEYDSQFFEFETENEVYSVWQDSQDYKKLIAIQKQEPCLSLAQGCS
KENSDWVNQCNEWGYDTDYISDDLIEAAANAAEKELTSKGKATVNETLKESEFQLEGGSF
YKESTAGKHLVHSFNHKLADQSKFKTNADIAAQSKANEVVPKKQKEQLADASKLNKEKRK
NSTTCPGQKELVVAKSVRTGSKSPKKLNRVGRSSKIQVHQVSAQKLVPSRVLPAVVPPKK
DRKCPEPASRVEKLGLKKAPRRAFEFSQRSLDSLAKLRSHGQAAGALEIKRKGKPILIAP
LPVPVKGHKLLACQDLQFYRQTRPKKRVKEKDPGEGSKHRTKSVKSTVIEKPPRQESMSH
ELVKSAESWKPKTDSATSKLAPDSINEGKQLSRDTSVEHDIKSKNVSKMNENNNMALVEM
NINMQENNTTEIFLNIPSHLSLPLNSLHEEEKSELNKNDEINTDNLFLTQLSPIDMELCS
QEEDLDIKKDTTGDAIDLAKHISRTVSYESLCKQKGCTQTAEQPGIYCCKHSNLVTSNDQ
HFVKPDLPASLFKPHKPSTVKVFSTKMSSRNASLTKDLENFSKLPPAVKNKSQATRPMVP
KSNESILTFGQNMIAQPLIHRASTAQCSRSEAGSAPSGTQGHHFSTFHHVNPPQRDQAFL
VREILQWEYEMFSNFPHVGAPINVCQFDLTTVPPRFYDYENYFRVFFPLMMLNTFESLVQ
VWKERKNLTYELHRSSKIQMNPADYKVFIRDCDLNRQLHPREDDLVFLWEPHHQNIYSPN
QGDLENPLRYYIGYVSRFNRSGATETRSKEQYVTCHLSIQTQSNFSNSSQKVNCEVIGSL
VTTRRQFKALLQLLRSPLFKPIISPSPADFFPRDKINMPTEGSVLSRMRKYNEDQKKAIV
TAFAMVKQHPKLPRICLIHGPPGTGKSETIVGFLQRILIENHGNEIAQNLNTKNKRNRVL
VCAPSNAAIDELMKKIILGFKSRCRDKNNTLGNCGDINLVRLGSEKTIDKTVVKFSLDYR
VNHTIEKAQLGRYQDFQKRKEELDRLLDELSRQRARERCNKSKECEILDERILRLSSERQ
QLTSKQKEMRPYEIQRTIILESHIICCTLNTSGSILLESAFRHLGHDPFNCVIVDEAGQA
CEVETLIPLIHRCSKLILVGDPEQLPPTVISKKAESVGYGKSLMARLCNSLDNEAQLGIE
AKKAILQLTVQYRMHPDICLFPSNYIYGKLLKTYKGTEENRCSSAWPFQPYLLFDVSDGY
EKRENESYCNPQEVKLTMKIIKVIKDRKTEMKGCSFGVITPYKAQKNMILHELKREFGET
SSDTWQVDTVDGFQGREKDCVIVTCVRANATSGCIGFLDSRQRLNVTITRAKFSLFILGS
LKTLMENQDWNNLIQDAQRRGAIIRTLEQNYWKHANRIQKPKPAPQHNVSHLTGAGLERG
ASCRSHGDTSHGVTSEFLNDLNRLSALPLSPAAPKPQPSMPRNGGFRPPMVPSALPLAPA
APKPQPSMLRNESFRPPMVPSAGDFEKVSVQTKAACTALVPPAMPEKPRDPRLAQKEKNA
NKDYARKINRAPSYLDAVVPLDLSRAAVHLGQGGNPEASSFNRPAQTVHPDQIMAPPATE
TSQAPREGNNQNKDCQIARKKPPDESLDRQDVKKRKLSL
NT seq
8400 nt
NT seq
+upstream
nt +downstream
nt
atgaacacatgctgttggtgtacacctggtaggtccttcaccatagagctcataagaaaa
tactcatccaagaatttatcctccaaggatcttgtagcagctaatgttgatctctgctac
tgcctggaatgtgtggttgaataccataaggcacgagatgaactggcttttctgcataag
gacctttgggggctggaaacatctcgtcttgttgcccagtttgagaaagccctgtttaaa
gatgatgaagatgaagatgagttgctcttggtggaagaggacagagaaacacgactgtct
ggatacacaagccctgattttgagaacagcctaagggtgcccctgctagaaatcctgaaa
tatccatatcttttgctgcatgagcatttgggtgaactctgtgttgctgcattgtgcaag
atggaacaggtgaaccagtcttttcaggtctatgacaaacatccaggaatctatcttctt
ctagtgcaccccaatgaaatgattcggcgatgggcaattctaacagcaagaaccttgggg
aaggtggaccgagatgattactacgacctgcaggaggtttttacttgcttgtttaaggtc
attgaactgggactgtttgaaaatccagatatttatagcttctccgagattgcaaaaggg
aaacttgttctcctgccaccacatctttatgacaccaagaactacaaaaactactggtta
ggtatttgcatgctactcagtgttctggaggagcaggctatggattcattgcttctgggc
ccagacaagcagaataatttcatgcagtccatacttaacaccatggtgaagaaaactgac
aatgacagcacaagccctttctggccagccttgcattgctttatggtgattctggatcag
ttgggttccaaagtatgggggcagctcatcgatccaattgaggcattccaaaatataata
aacagcccaagctacaagaatgagattgaacacattcgcaggagcaccatcagaatgaaa
tgcgaaccagagtcaaattacagtgatgatgatatcgtgtcttgcagtcaaattgtgtac
aactacaatgcagaaaaaccaaaaaaggatgctggttggaaaagtgccatatgtccagat
tactgtcccaatttgtatgaagaaatgcagacactaacaaatgtgttgcagtccgatatt
ggccaagacatgcgagtacataatagcactttcctatggttcattccttttgttcaatct
gtaatggatttgaaagactttggtgtggcctatatagtggaggtcattcaccaccttcat
tctgaaatcaaggatgtcctcaacagaagagttgagcactgtgaccaggtcactgaattt
tttatcctgatcttggtgtctgtgattgaacttcataggaataaaaagtgtttgcatttg
ctgtgggtcagctcccagaaatgggtagaagcattggtcaaatgtgctatgctgccagca
agagacttcaggcgacacgtggagaaaacgtccactcattgttctaaaataacatcaact
acatcatcgcctacacctacttcagtgaactcgcaagctgctaactctgtccagtatgcc
tgcctccaattaattcgaagtcttctgagggaaggttgccaattagggcagcagagcacc
tgcaagaaatttttagatatactcaaccaccttttgaggagcagttcgttccagaccttg
atactcaatgaacaagaaaccaatggtttagaatcgtgtttgaagcaggtaatcaaaaac
accaaggacagaatgtcagtaatggttagctcacctgtggaggacaattctgggtgtaaa
ctatcatctagtttttttattaagcaagaaaatgtagaaggggatgactaccacatgaga
gcaccctcttggaatagttccagtctacatcaaccctcagagagtaggacaaatgaagtt
tgtcaaagaagtctttatgcaagtagaaatctgagttttcaagaaggtcctttggaaacc
tgtagtaaagattcaaaggtgtgttcagagacagagcacccgtttgctcagggtaattct
ggtgttagcagatcatttgaaaacctgaaaatttctgacaaggttgtgacaacaagcagg
aacagggattttcagaacactgaacagcaggagtcagccaaggaaaatgcagctgaaaat
aaatctctgtctgatgaccatatcagtacgagtcaccaggaatcagcttcaataggtcaa
agtttgtgggaaggtaggcacaaagaaggaacatgggggagagagtccagcaatgaattg
gatggggaagacagtaaaccttcttcctctttaaaatgtgtgattgattccacaaaaact
aagaatcttaaaaccaagttaaacacatctagttcgcaatcaaggttgtcagtggtgatg
gataaattcaaaaatattttgaaaagcaaaggggcaaatgatacctcagacccagacaca
caaagtggccagtctaaaaccatgaatatgaatccagcaaacatgagaaacaatcaaata
aacagtgctttgtgtataaagacaacctctgagacctatgcacaacaaaactgtggaaat
gaagagaaacccacaaacaaaattttaacagtgagccttaatcctattaagctggaatct
gacagtttattaaaatattccctgtcttgtacaaaactaaatgagactgaaaaggtcagt
gaaaatgatgatgttaatagtgatactgatgacgatgtatcacttgcagatattagaaat
aatttattgaaaaaatgtcctactcactttagtaacttgccagatactctaggagataaa
gtccctgaaaaagtggccttaaatatagaacaagccaaactggagagcttgtcctcaaga
aaagacaagattagggactatgcagatacaggaagtgacagtgctcaagatgattctggc
cttgcgtatcggaaggtcaaaaataaatatttgaaagttgattccatgcccatgaatcgc
aaattggacgtcagtctctgtcccttaaaatcctcagatgttgacaggaatcttgatagg
ctgtcgttaattgcctatgcaaaagggatgaacttccctggggattctagtccagagacc
tcagcatctcagttgccagatcaggttcagaggaaaatgagagtggagggtagattttca
gttggtgagcaaagtaattgttcctcttctgatattaaaactctctatgagccaattgtc
atttctgattcttctgacgaggagagaatgcacacagctgtaagtaacgagagagactgt
cctgttaagcaaccttcaacatctacctgttcctctgtaagcttggaaagaaatgttaaa
gatcaaataaaagtgaagtgtgaaagcttgcctatgccatgtgatgaatatgattcacag
ttttttgagtttgaaacagagaatgaagtttattcagtttggcaggactcccaggactac
aaaaagttgattgcgattcagaaacaagaaccttgtttatctttagctcaaggctgctcc
aaggagaattctgactgggtaaatcaatgtaatgaatggggatatgacacagattatatc
tctgatgacttaatagaagcagcagctaatgctgcagagaaggaactaacaagtaaaggg
aaagccactgtgaatgaaacgcttaaagaatctgaattccaactagaaggaggaagcttc
tacaaagaatctacagctggtaaacatttagttcattcgtttaatcataagttagcagat
caatctaaatttaaaactaatgcagacattgctgctcaaagtaaagcaaatgaagtggtt
ccaaagaagcagaaagagcagctagcagatgcttcaaaattgaacaaggagaaaaggaaa
aattccaccacatgtcctggacaaaaagaattagtagtggctaaatcagtcagaactgga
tcaaagagccctaaaaaactgaatagggttggtagatcaagtaaaatacaagtccatcaa
gttagcgcacaaaaactagtaccctccagggtattgcctgccgtagttccacccaaaaag
gatcgtaaatgtcctgagccagcatccagagtagaaaagcttggtttgaaaaaggcacca
cgtagagcatttgaattttcacagcggtcattggatagtttggcaaaattacgcagtcat
ggccaggctgcaggagcccttgaaataaagaggaagggaaaacctattttaattgctcct
ttacccgtgccagtaaaaggacataagttgttggcgtgtcaggatctccagttttatcgt
cagacaagacctaaaaagagagtcaaagaaaaggatccaggagaaggatccaaacatagg
accaagagtgtcaaatctactgttattgaaaaaccacctaggcaagaatctatgtctcat
gagttggtgaaatctgctgaatcttggaaacctaagacagactcagcaacctcaaaactt
gctcctgattcaattaatgaagggaaacagttgagtagagacacttcagtagaacatgac
atcaaaagcaaaaatgtgtcaaaaatgaatgagaataacaatatggccttagtagagatg
aacataaatatgcaagagaataacacaactgagattttcttaaacattccttcacatttg
tctttaccactcaattctcttcatgaggaggagaaaagtgagttgaataaaaatgatgaa
atcaacacagacaacttatttttgacccagctgagtccaatagatatggaattatgttca
caggaggaagatctagacattaaaaaagataccactggtgatgcaatagaccttgcaaaa
catatatccagaacagtttcttatgagtctctgtgcaagcaaaaaggttgtacccagact
gctgagcagcctggtatttactgctgtaagcattctaaccttgtaacatcaaatgatcag
cactttgtcaaacctgacctgcccgcttcactcttcaaaccccacaaaccctctactgtt
aaggttttcagtaccaaaatgtcatctcggaatgccagcctaaccaaagatcttgaaaac
ttttcaaaactcccaccagctgtgaaaaacaaatctcaggcaacaagaccaatggtacca
aaatcgaatgagtcaatacttacatttggccagaatatgattgcacagcccttgatccat
cgggccagcactgctcagtgttccagatctgaagctggaagtgctccttctgggactcaa
ggccaccacttttccactttccatcatgtaaaccctccacaacgagatcaagcttttctg
gttcgagagatcctgcaatgggaatatgaaatgttctcaaactttccccatgttggagcc
cctattaatgtgtgccagtttgacttaactactgttcctcctcggttttacgactatgag
aactacttccgtgttttcttccctttgatgatgctaaacacgtttgaatctctggttcaa
gtatggaaagagaggaaaaacttaacttatgagctacatcgttcctccaaaattcaaatg
aatcctgctgattacaaagttttcattcgtgactgtgacctgaataggcaactccatccc
agggaagatgaccttgtctttttgtgggagccacaccatcagaacatctattctcctaat
caaggtgatctggagaaccctctaagatattacattggctacgtgtctcgatttaatcgt
tctggtgctactgaaacaaggtccaaggagcagtatgttacctgccacctttccatccag
acccaaagcaatttctcaaatagcagtcagaaagtgaattgtgaggttattgggagtctg
gttacgactcggcgtcagtttaaagctttgctgcagcttttgcggagccccttgtttaaa
cctattatcagcccaagtcctgctgacttcttcccacgggataaaattaatatgcccact
gagggctctgtgttgtctcgcatgagaaagtacaatgaggatcagaaaaaagccattgta
acagcctttgctatggtaaagcagcatccaaaacttcctcgaatctgcctgatccatggc
ccacccggcacagggaaatctgagactattgtgggcttcctgcagcgaattctgattgag
aatcatggcaatgagatagcccagaacttgaacacaaagaacaaacgcaacagagttctg
gtttgtgccccatccaatgctgcaatcgatgagctcatgaaaaagataatcctgggattc
aaatcaagatgcagagacaagaacaatactttaggtaactgcggagacattaacttagta
cgcctcggctcagagaagactattgataaaactgttgtgaagtttagtctggattatagg
gtgaaccacacaattgaaaaggctcagctgggtcgttatcaggactttcagaaaagaaag
gaagaactggatcgccttctagatgagctctcacgccagcgagccagggaaaggtgcaac
aagagcaaagagtgtgagattcttgatgagagaatccttagactttcaagtgagaggcag
cagcttacaagcaaacagaaggagatgcgcccttacgaaatacaaaggaccatcatcctg
gagtctcacattatttgttgtactctgaacaccagtggtagcatcttgctggagtctgca
tttcgtcatctggggcatgaccctttcaattgtgtcattgtggatgaggctgggcaagca
tgcgaagttgaaaccctaatccctttgattcatcgttgctctaagcttattttggttgga
gatccagaacagctgcctcctactgtaatctctaagaaagccgagagtgttggctatggc
aagtctttgatggctcgtctgtgcaatagtttggataatgaggcacagttgggcattgaa
gccaagaaggccatcctgcagctgacagtgcagtaccgcatgcacccagatatctgtctc
ttcccttccaactacatctatggaaaacttctgaagacatacaaaggcacagaagaaaat
cgctgctcctcagcctggcctttccaaccctacctgctttttgacgtgtcagatggatat
gagaaacgggaaaatgagtcttattgtaatccccaggaggtcaaactgactatgaaaata
attaaagtgattaaagataggaagacagaaatgaaaggttgcagctttggtgtgatcaca
ccttacaaggcccaaaagaacatgatcctgcatgaattaaagagagaatttggtgaaacc
agcagtgatacttggcaagtggacactgtggatggttttcaaggtcgtgagaaggactgt
gttatagttacctgtgtcagagcaaacgctacttcaggctgcattgggtttttggatagt
cggcagcgtctaaatgtcaccatcacacgtgccaagttcagtctcttcatcctcggcagt
ttgaaaactctgatggagaaccaagattggaataacctgattcaggatgctcagagaagg
ggagccattatcagaaccttagaacaaaactactggaagcatgctaacagaattcagaaa
ccaaaacctgcgcctcagcataacgtatcacaccttaccggtgcaggcctggagagggga
gcaagctgcagatcccatggcgacacttcacacggtgtgactagtgagtttttgaatgat
ttgaatcgactttcagcactaccactctcaccagcagcacctaagccacagccatctatg
ccaagaaatggggggtttcgtccaccaatggtgccttctgcactacctctcgcaccagca
gcacctaagccacagccatctatgctaagaaatgagagttttcggccaccaatggtgcct
tctgctggggacttcgagaaggtttcagtacaaactaaagctgcctgcacagcactagtg
ccacctgctatgccggagaagcctcgggaccctcgtttggctcaaaaggaaaaaaatgct
aataaagactatgcaagaaagattaatcgggcacctagctatctagatgcagtggtgcca
ctagacctatctagagctgctgtccatctgggtcagggcggtaatcctgaagcttccagt
ttcaacaggcctgctcagactgtccatcctgaccaaattatggcacctccggccacagaa
acctctcaagctcccagggaaggaaataaccagaataaggattgccaaattgctagaaag
aaaccaccggatgaatcactggacaggcaagatgttaagaaaagaaaactttctctctag
DBGET
integrated database retrieval system
