Geotrypetes seraphini (Gaboon caecilian): 117367617
Help
Entry
117367617 CDS
T09159
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03030
DNA replication
gsh03410
Base excision repair
gsh03420
Nucleotide excision repair
gsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117367617 (LIG1)
03410 Base excision repair
117367617 (LIG1)
03420 Nucleotide excision repair
117367617 (LIG1)
03430 Mismatch repair
117367617 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsh03032
]
117367617 (LIG1)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117367617 (LIG1)
Enzymes [BR:
gsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117367617 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
117367617 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117367617 (LIG1)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117367617 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117367617 (LIG1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117367617 (LIG1)
NER (nucleotide excision repair)
Other NER factors
117367617 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
117367617 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
117367617
NCBI-ProteinID:
XP_033816238
UniProt:
A0A6P8SII2
LinkDB
All DBs
Position
10:138156194..138291647
Genome browser
AA seq
969 aa
AA seq
DB search
MQRTIRSFFQPKQGAKVKKEECSEAAKSKEVTEESPESPRVAEYPLKERNGTVHCREVNS
PIKRTSKKSIQVLDSDSEDEAAAAGNQVVAQAEVVQSVTETPQRIPGRKEPFSTSSTPQT
DSTHDAASPCSSLSGSSPITPDPALISPSGIPKRRTARKQLPKRLLESSHGEEETKEDLD
ARESSSKRRKKERDDAVAPSEKKSEAMEMEDTVPSSEMESAGEGKIQNACVGRPPHGQLK
EESVEEQVKETKPTKSTKAISSFFAPRKSTIKAENKEENASLKTDSPRSPGTSDKSKVAP
GSSIIGIAKSEASHDPVEYNPSKSRYHPLKDACWSQGQKVPYLALARTFERIEEESARLK
NIETLSNFLRSVIALSPDDFLPCIYLCLNQLGPAYEGLELGIGETILMRAVAQATGRQLD
KIKVEAQEKGDLGLVAESSRSTQRTMFAPPKLTAVGVFGRLKEIARMTGSTSMNKKIDII
KAMFVACRHSEARYIIRYLGGKLRIGLAEQSVLSAIAQAVSLTPPGQGFPPEVVDAGKGM
SPDSRKAWIEERALILKQTFCELPNYDTIIPVLLQHGIENLPQHCRLTPGIPLKPMLANP
TKGIGEVLKRFDEASFTCEYKYDGERAQIHILESGEVFIYSRNQENNTSKYPDIIGRIPK
VKKESVRSCIIDTEAVAWDPETKQIQPFQVLTTRKRKDVDAAEIKVQVCVYAFDMLYLNG
ESLVKEPFARRRQLLREAFVEKEGEFLFATFMDTSSMDEISEFLDQSIKESCEGLMVKTL
EQDATYEIAKRSRNWLKLKKDYLEGILDLDLVVMGAYLGKGKRTGMYGGFLLGAYDEESE
EYQTICKIGTGFTDEDLEQHYNFFKDHVIEKPRPYYRWDSATEPDHWLEPAQVWEVKSAD
LSISPVHKAAQGLVDEMKGISLRFPRFVRIRDDKKPEEATSSTQVAELYKKQQQIQNAMT
AEKGVEDFY
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcaccatcaggtcgtttttccagcccaaacagggggcaaaggtgaagaaagag
gagtgttcagaagcagcaaagagcaaagaagtgactgaggagtcccctgaaagccccagg
gtggcagaataccccctgaaggaaaggaatggcacagtacattgcagggaagtaaactcc
cccatcaaacgtacctccaagaagtctatccaggtcctagacagcgatagtgaagatgag
gcggcggccgcagggaatcaggtggtggcccaagcagaggttgtgcagtctgttactgag
acaccacaacggatccctggtaggaaggagcctttctctacatcgagcacacctcagact
gattccacccatgatgcagcttctccttgcagtagcctatcagggagtagccctattacc
cctgaccctgctctcatctcgccctcaggcatcccaaaacgcagaacagctcgcaagcag
ctcccaaaacgattactagaatcatcccatggagaggaggagacaaaggaagatctggat
gcgagggagtccagctctaaaagacggaagaaagagagggatgatgcagtggcgccatca
gaaaagaaatcagaggccatggaaatggaggacacagttccaagttcagagatggagtct
gcgggggagggcaaaattcaaaatgcttgtgttggaagacctccccacggccaattgaag
gaagaaagtgttgaggagcaggtgaaggagaccaagccaacaaagtcaacaaaagccatc
agcagcttttttgctccaaggaagtctacaataaaggcagagaacaaagaagaaaatgcc
tcgttaaaaacagacagtccgagatcccctgggacaagtgacaagagcaaggtggcacca
ggcagcagtatcattgggattgccaagtcagaagcatcccatgatccagtggagtacaac
ccttccaagagccgctatcaccccctaaaggatgcctgttggagccaaggtcagaaggtt
ccctaccttgcattggcccgcacctttgagagaatcgaggaggagtcggccaggctgaag
aacattgagactctaagcaacttcctgcgctcagtgatcgccctgtccccagatgatttc
cttccctgcatatacctttgcctgaatcagctgggccctgcctatgagggactggagctg
ggcattggggagactattctcatgagagctgttgcccaagcaacaggccgtcagctggat
aagatcaaggtggaagcacaggaaaagggggatctgggcctggtggcagagagcagccgt
agcacccagcgcaccatgtttgctccaccaaaactaaccgctgtcggtgtctttggcagg
ctgaaggaaatagccaggatgacaggtagtacgtctatgaacaaaaaaattgatattatt
aaagctatgtttgtggcctgccggcactctgaggctcgttacatcattcggtatcttgga
gggaagctgcgcattgggctggcagaacagtctgtcctatctgccattgcacaggcagtg
tctctgacgccacccgggcaagggttccctccagaggtggtggatgctgggaagggcatg
tctcctgactcccgtaaggcctggatagaagagagagccctgattcttaaacagaccttc
tgcgagctgccaaactatgacaccatcatccctgtcttactgcagcatgggattgaaaac
ttacctcagcattgtcgccttacaccaggaatccctctaaaacccatgttggcaaacccc
accaagggcataggggaagtgctgaagaggtttgacgaggcttccttcacctgcgagtac
aagtatgatggggagcgagcccagatccatatcctggaaagtggagaagtgtttatatac
agccgaaatcaggagaataacaccagcaagtatccagatatcatcggccgaattccaaag
gttaagaaagaaagtgtgaggtcctgtatcattgacacagaagctgttgcctgggaccct
gaaacaaaacagatccagcccttccaggtccttaccacccgcaagcgaaaggatgtagat
gctgcagagatcaaagtccaagtgtgcgtgtatgcttttgacatgctgtacttgaatggg
gagtcgctggttaaagaaccctttgcaagaaggcgacagcttttacgggaagcctttgtg
gagaaagaaggggagttcctgtttgccaccttcatggacacatccagcatggatgagatt
tcagagttcctcgaccagtccatcaaagagtcctgtgagggactgatggtaaagaccctt
gagcaggatgccacctatgagattgctaagaggtcacgcaattggttgaagctgaagaag
gattacctggaaggcatactggatctggatctggtggtgatgggtgcttatctgggaaag
gggaagcgcactggtatgtatggcggtttcctgctgggagcatacgacgaggagagtgag
gagtaccagaccatttgcaagataggaacaggtttcacagatgaggatctggagcagcac
tataacttttttaaggatcatgtcattgagaagccccgtccttattaccgctgggacagt
gccacagagccagatcactggctggagccagcacaggtgtgggaagtgaaatctgctgat
ctctccatctctcccgtgcataaggctgcccagggactggtagatgaaatgaaggggatc
tccttacgcttccctcgcttcgtgcgtatccgagatgacaagaaaccagaggaggcaacg
agcagcacccaggtagctgagctgtataagaagcaacagcaaatccagaatgctatgaca
gctgagaagggagtggaagatttctattag
DBGET
integrated database retrieval system
