Geotrypetes seraphini (Gaboon caecilian): 117367774
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Entry
117367774 CDS
T09159
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gsh01001
]
117367774 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117367774 (TRIM28)
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117367774 (TRIM28)
Protein kinases [BR:
gsh01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
117367774 (TRIM28)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117367774 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
PHD
zf-RING_UBOX
PHD_2
zf-C3HC4
Bromodomain
zf-RING_2
zf-RING_13
MCM4_WHD
Motif
Other DBs
NCBI-GeneID:
117367774
NCBI-ProteinID:
XP_033816585
UniProt:
A0A6P8SD42
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All DBs
Position
10:136004157..136083382
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AA seq
807 aa
AA seq
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MAATTTTTPTTPTARKSAAGGGGGSSGTTIIAALPPESLELLENCGVCKMSLRTKREPLL
LPCLHSVCQACLRPEGQPAATEGASVNCPVCKHQCFQKDIVENYFLRESTTAGGSELQKE
SSKRCTSCEDNAVATSYCIECTEWLCGTCVGAHQRVKYTKDHTVKVTGASKSNEGERSVF
CPLHKHEPLLLFCDTCDTLTCRDCQLQSHNDHQYRFLDDAVKNQRKILAGLVKRLEEKHH
VLQMSTMDVRAAIRQVADAQKKVQVDIKMAILHIMKELNKRGKLLVNDVQKVTEGQQERL
ERQHWSMTRLQGHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMTVESVEALGD
MKFQWDSDVWTKYAESFGKIVSEKSGVVQNLSGSSTLQSASGLQSVNKRSQNMNSTAGSK
HSSTSTTAPQVIDFTEGSSHAFGEGASGYDPNVSGLKRPRSSDGDVNDILKKVPRVSLER
LDVDLTPDSQPPVFKVFPGNTTEDFSLIVIERGNMPEEAVVKEETMETMIMPPGAESCEA
KPLLLAQDTTTESLITVPQMLVPPNVGATSEASTLEFSTTLPPVASSGALSCKVCQKDGE
LLACNQCATRFHTDCHLPVVTEPNSMEWKCLLCQDLPVPELPASTGTILQADSSSEKLSP
TFQTKCERLLLELLCYEPCRPFHRLSSSSDNKSPIDLTLIRAKLQGKMDPPYCSPDDFVR
DVWTMFTNFNRLAEDKEVVQSIIGLQAFFETKLSVQFGDRKFSCILGEVMPEEEQQSESN
SLTHRSTPVSTTSESAIPVVKSNLEEE
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccaccaccaccacgccgacgactcccacggccaggaaaagtgccgccggt
ggcggcggcggcagcagcggaaccacgatcatcgccgcgctgccgcccgagagcttggag
ctgctggagaactgcggcgtgtgtaagatgagcctgaggaccaagcgggagccgctgctg
ttgccctgcctgcactcggtgtgccaggcctgccttcgacccgaaggccagccggctgcg
accgaaggagcttcagttaattgtccagtgtgtaaacatcagtgttttcagaaggatatt
gtggagaattatttcctgagggagagtaccactgcagggggaagtgagctccaaaaagaa
tccagcaagaggtgcaccagctgtgaagacaatgctgtggccacgagttactgtattgag
tgcacagagtggctatgtgggacttgtgtaggggcccaccagagagtgaagtacaccaaa
gatcacacagtaaaagtcacaggtgcatcaaaatcaaatgagggggagcgttctgtgttt
tgtccacttcacaagcacgagcctctgctgctgttctgtgacacatgtgacacgctgacc
tgtcgggactgtcagctgcaatctcacaatgatcaccagtatcggttcctggacgatgca
gtaaaaaatcaaagaaagatcttggcggggctggtgaaacgcttggaggagaaacatcat
gttctccagatgtctacgatggatgttcgagccgcaattcgtcaagtggcagatgcacag
aagaaagtgcaggtggatataaagatggccattctgcatattatgaaggaactgaacaag
cgtggcaagttactagtgaatgatgtgcagaaagtaaccgagggacagcaggagagatta
gaaaggcagcattggtccatgaccagactacagggacaccaggaacatatccttcgtttt
gcctcatgggccctggagagtgacaacaacacagctctgctactgtccaagaagctgatc
tatttccagctgcaccgtgctctgaagatgacggtagaatctgttgaagcccttggagac
atgaaatttcagtgggattcagatgtgtggaccaaatacgcagagagttttggtaaaata
gtttcagaaaaatcaggggtagttcagaatctgtctggatcatccactctacagtctgct
tctggcttgcagtccgtgaacaagaggtcccagaacatgaactccacagcaggctccaag
cactcctccacctccaccactgctccccaggtcatagacttcacggaggggtcaagccat
gcctttggagaaggagcatctggttatgacccaaatgtatcaggactgaaaaggcctcgt
agctcggatggggatgtgaatgatattttgaagaaagttccccgagtcagcctggagcgc
ttggacgtggacctaacgccagacagccagcctcctgtttttaaagtgtttcctggaaat
acaactgaagatttcagcttgatagtcatagagcgagggaatatgccagaagaggctgtg
gtgaaggaagagaccatggagactatgataatgccacctggggctgaatcctgcgaggca
aagcctcttctccttgcacaagacactaccacagagagcctgattactgttccccaaatg
ttggtgcctccaaatgttggtgccaccagcgaggcttccactctagagttctcaaccact
ctgccaccagtagcatcctctggtgctttgagctgtaaagtgtgccagaaagatggggag
ctcctggcatgtaaccagtgtgccacacgcttccacacagactgccaccttcctgttgtg
acagagcctaacagcatggagtggaagtgtttgctttgtcaggatttgccagtcccagag
ctgccagccagtaccggcaccatcctgcaagcagactcaagttctgagaagttatctcca
accttccaaacgaaatgtgagcgcctgttgttggaactgctatgttacgagccttgccga
cctttccataggctgtcctcttcctcggacaacaagagccctattgacctgacactgatc
cgagcaaagttacagggaaaaatggatccaccatactgctccccagatgactttgtgagg
gatgtttggaccatgttcacaaatttcaacagacttgctgaggacaaagaggtggtgcaa
tccataattggactgcaggcattcttcgagaccaagttgagcgtgcaatttggcgacaga
aagttctcctgcatcttgggagaagtgatgccagaggaagagcagcagagcgaaagcaat
agcctgacacacaggagtaccccagttagtacaaccagtgagagtgccatccctgtggtt
aagagcaacttggaggaggaatga
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