Geotrypetes seraphini (Gaboon caecilian): 117367941
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Entry
117367941 CDS
T09159
Name
(RefSeq) collagen alpha-1(XXVII) chain B-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117367941
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117367941
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117367941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
117367941
NCBI-ProteinID:
XP_033816952
UniProt:
A0A6P8SF67
LinkDB
All DBs
Position
10:48031988..48331668
Genome browser
AA seq
1829 aa
AA seq
DB search
MLTDTSLQCFTSLWTDGGSRERENSGLQIFATWPKLSFPLRSCGGVVLGHMYSSGNRFPN
ERSAARPQRRPLFRSAAAAPRSALSARRLRCSQWGRRKRRSDGANRKNEVIVMDPSRGGF
SFLCLTLCFTCCLGFIHGTSEGVNVLQRLGLMRNQTSTGWPSLCSLPRGVIPFKSGVLFT
QKTLIKAPIRTVIPAPFGTDVFLVLSLCSHRINDAFLFTVKSKRHKLQLGVQFIPYKIIV
HVGHKQSVYFDYNIHDGQWHNLAIDIRDQQVTLLTSCGKESADADLLLKKNEAFDPEGSF
LLGKINQHSVQFEGAICQFDIYPSAKRARNYCRYLKKRCKQMNTYWLNFLPPVSFLPRDM
NTTHCTDPKTEYPVKDLISWTTRILPGIVATTPPFRNREALAVRSKLLSLRLITSSSDLK
KIPSSIFARNASQAGSSQMMTTRPALRIYQPTSLKREEKHNFASILPDFHNATTHRIKPE
EEIRKKLDQGKLIKSHGTTSPVKLLRNNSGNLTKDFYSMAHKPNSETVMDGIVKTKQQWN
KKLYPTVISLLYTKPSLESFRSVTRASQHSSNIATDSYMLFGFPEPTQSPLLMGPPGQKG
DQGPPGLHGLPGLPGPFGKRGPRGPPGPHGNPGRSGSPGAKGQKGDPGISNGKALSGLKG
GIGLPGLLGLHGPLGQKGKKGYPGPPGHPGDQGEHGPDGSPGVKGYPGRQGLPGPVGEAG
AKGSRGFIGFSGLFGLPGPNGERGLTGVPGKRGKMGRPGFPGDLGERGPPGLDGNPGELG
APGPLGVVGLIGDVGAVGPIGFLGPQGLKGVMGNPGQPGLKGDKGNQGLPGIPGEVGFQG
DKGNQGLPGVRGMQGKPGSAGRPGNKGPVGFTGAPGLEGFPGDIGQPGQNGQEGLKGKPG
AQGLPGHRGQPGEEGDEGVIGPSGMPGPEGPPGRKGFPGKIGPDGPEGEPGDTGKAGTTG
EQGLVGFIGPVGETGIAGEKGDRGEAGPPGPPGVKGSMGHPGRPGEIGSPGPPGIAGPVG
FRGPPGTRGPKGRRGARGPDGPAGEPGSSGDKGIWGEPGKQGIGGSQGTAGDSGEMGPRG
LPGVRGSTGPRGVKGIPGEVGPQGPQGPVGPLGKTGPRGLSGRPGEAGVMGEPGMKGDYG
PLGIPGEQGLVGQRGEPGLEGDGGPAGPDALKGEKGEPGHKGEKGEKGEEGPKGKYGSSG
YPGITGVRGPEGKPGKQGERGQPGQKGSKGFQGHMGEIGLPAATGPIGSKGSKGSRGNMG
YVGFPGRMGIQGEPGLLGYQGHAGSQGPIGPPGQKGEKGDQGDDGKMEGLPGLPGDRGPV
GDPGGRGEQGDPGYVGQEGLEGSRGKPGQQGLIGDPGAPGLPGLKGSKGIEGPKGKQGIH
GEQGIRGSLGPVGFPGPRGMVGRQGQEGVAGVDGVPGINGMLGIQGEQGDDGEIGSLGMS
GKRGDTGFQGLPGAQGPPGIKGERGLPGQTGAPGKRGTEGGVGLPGGPGEPGVRGQLGDL
GESGFPGIPGILGAKGPPGDTGFKGIQGPKGPPGLMGKEGIIGPAGIRGPIGNLGPKGNK
GSSGDMGLQGPKGLPGLPGQPGIPGSPGIPFSFGLDNLSTAFRALMDSSGVFRTETYANS
DFLLLNQEGEIFKTLHYLSSLVQNIKNPLGTRENPVQICRDLMNCEQKISDGTYWIDPNL
GCSSDTIEVMCDFTQGGQTCLKPVTVSKLEFDVGRVQMNFLHLLSSEVVQHITIHCLNMT
IWQEVAAEKPSHTAVRFKAWNGQVFEAGGQFQPDVLVDDCMLQDGLWHQTLFLFRTQDAH
QLPIVSIYNLPPSQPGKLYHLEVGPVCFL
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgctcacagacacatcgctccagtgctttacctctctctggacggacgggggcagcagg
gagcgcgagaactcgggtcttcaaatatttgccacttggccaaagctttcttttccactc
cgaagctgcggaggagtggttctgggacacatgtacagctcagggaaccgcttccccaat
gaaagaagtgcagcccggccccaacggcgtccgctcttccgaagcgcggctgcggctcct
cgcagcgccctttctgcccggcggctacgctgcagccaatggggacggaggaagcgtcgc
tctgatggggcaaataggaagaatgaagtaatcgtgatggacccgtccaggggcggcttc
agctttctctgcttaactttatgttttacctgttgcttgggatttatacatggaacatct
gaaggtgtgaacgttcttcaaagactgggccttatgagaaaccaaacgtcaactggttgg
ccttcactatgctcgttgcctcggggggtcattcctttcaaatcaggagttcttttcacg
cagaagacactcatcaaggcaccgatcagaacagttattcctgctccttttggcacggat
gtgttcctggtgctaagtttgtgttcccaccgcattaatgatgcttttttatttactgtc
aaaagtaaaagacataaactgcagctaggggtccagttcattccatataaaataatagta
catgtaggccataaacagtctgtatattttgattataatattcatgatgggcagtggcat
aatcttgccattgacatcagagaccaacaggtcacattattaacttcttgtggtaaagaa
agtgcagatgcagatttactcttgaaaaaaaatgaggcatttgatccggaaggatctttc
ctgttaggaaaaataaaccaacactcggtacagtttgagggtgccatttgtcagtttgac
atttatccttctgccaagcgggctcgtaactactgccgatacctgaagaagcggtgtaag
cagatgaacacttattggctgaatttcctaccgccggtttcattcttacctagagatatg
aatactacacattgcactgatcctaaaactgagtatccagtgaaggatttgattagctgg
accacaaggatccttccagggattgttgctactacaccaccattcagaaatagagaagca
ttagccgtacgtagtaaactgttatctctgagactgatcaccagttcaagtgaccttaag
aaaatcccatcttccatttttgctagaaatgcatcccaggcaggcagcagccaaatgatg
acaactaggcctgctcttagaatatatcagcctacgtctttgaaaagagaagaaaaacat
aattttgccagcattctgcctgatttccacaatgcaaccactcacaggataaagccagag
gaagagatcagaaagaaattagaccaagggaaactcatcaagtctcatgggacaaccagt
cctgtgaagctgctgagaaataattcagggaacctgactaaggatttctactcgatggct
cataaaccaaactcggaaactgtgatggatggaattgttaaaacaaagcagcagtggaat
aaaaaattatatccgactgttatttcacttctttacaccaaaccatctctggaatccttt
cgttccgtcaccagagcaagtcaacactcgagcaatattgccaccgattcttatatgctg
tttggattccctgagcctacccaatctcctcttttaatgggacctccaggacagaaggga
gaccaaggacctccaggtcttcatggactacccggtcttccaggaccatttgggaaacga
gggccacggggtcctcccggtcctcatggaaatcctggtcgttctggttctccaggtgct
aagggccagaaaggggatcctggaatatcaaatggaaaagctctcagtggattaaaagga
ggcataggtttgcctggattgcttggactacatggtcctcttggtcagaaggggaaaaag
ggttatcctggaccaccaggccaccctggagatcagggagaacatggaccagatgggagc
ccaggtgtcaaaggttatcctggcaggcagggtctacctggacctgtgggagaggctggt
gctaaaggcagtcggggttttatcggcttctccggcttatttggacttccaggacctaat
ggagaacgagggttgactggcgttcccggaaagaggggcaagatgggtaggccgggtttt
ccaggagatttgggagagaggggacctccaggactagatggaaatccaggagaattaggt
gcccctggtccccttggagttgttggactcattggtgatgtgggagccgtgggacccata
ggcttcctaggaccacaaggattaaagggtgtaatggggaatcctggacagcccggactg
aaaggtgataagggtaatcaaggactgccaggaattccaggagaagttggattccaagga
gacaagggcaatcagggtttacctggagtaagaggaatgcaaggaaaacctgggtcagca
ggaaggcctggtaacaaaggcccagtggggtttacaggtgctccaggtcttgagggcttt
ccaggggacataggtcagccaggacagaatggccaggaaggactgaagggaaagccagga
gcacaaggtttgcctggacacagaggacagccaggggaagagggcgatgaaggggtaata
gggccttctgggatgcctggaccagaggggccacctggcaggaaagggttcccgggtaaa
attggtccagatggcccagagggtgaaccaggagatacaggcaaggcaggaactactggt
gaacaggggcttgtaggatttatcgggccagtaggagagactggtatagcaggcgaaaag
ggtgatcgtggtgaggctggaccacctgggcctcctggagtcaaggggtcgatgggtcac
cctggccgcccaggtgaaattggctccccaggacctccaggaatagcaggtcctgtggga
tttcgtggtcctccaggaacaaggggtccaaaaggccgtcggggtgccaggggtcctgat
ggaccagcaggagaacctgggtcttcaggtgacaagggcatttggggagagccaggcaag
caaggaatcggtgggtctcagggaacagcaggagacagcggagagatgggacctcgtggt
ttgccaggggttcgaggttctactggccctcgtggagtaaaggggattcctggtgaagtg
ggcccacaaggaccacagggaccagtcggcccattaggcaaaaccggaccaaggggactt
tctggacgcccgggagaagctggtgtcatgggtgaaccagggatgaagggggattatggc
ccactgggaatcccaggcgaacaaggccttgtaggacaaagaggtgaacctggacttgaa
ggggacggtggccctgcagggcctgatgccctaaagggagaaaagggagaaccaggacat
aagggggaaaaaggagagaagggagaagaaggaccaaaaggaaagtatgggtcatctgga
tatccaggaatcacaggtgtacgagggcctgaagggaaaccaggaaagcagggtgaaaga
ggccagccgggtcaaaagggtagcaaaggctttcaagggcatatgggagagattggcctt
ccagcagccacaggccccattgggagcaaaggctcaaaaggatctagaggcaatatggga
tatgtgggttttccggggagaatgggtattcagggagagcctggattacttggatatcag
ggacatgcaggatcacaaggtcctattggaccacctggacagaaaggcgaaaagggagat
caaggggatgatgggaaaatggagggcctccctggacttcctggagatagagggcctgtt
ggtgacccagggggaagaggagaacagggagatcctggttatgttggtcaagagggtcta
gaaggaagcagaggaaaacctggacaacaaggtttgattggcgatcctggagcaccaggc
ttgccaggcctaaagggatccaaaggtattgagggtcctaaaggaaaacaagggattcat
ggtgaacaagggatccgaggctctctgggtccagtcggattcccaggacctaggggaatg
gtaggcaggcaagggcaagaaggtgtagcaggtgttgatggtgtacctggaataaacggc
atgcttggaattcagggagaacaaggcgatgatggggaaataggttcattagggatgagt
ggaaaaagaggcgacactggcttccaaggtcttcctggtgctcagggacccccaggaatc
aagggtgagagaggattacctggacaaacaggtgctcctggaaaacgaggcacagaagga
ggagtgggactcccaggagggcctggtgaaccaggagtcagaggacagttgggagactta
ggtgagtcgggatttccaggaataccaggcatcttgggggcaaagggaccacctggagat
actggtttcaagggtattcagggccccaagggaccaccagggctgatgggtaaagagggc
atcattggcccagctggaattaggggtcccattggaaatcttggcccaaaaggtaataaa
ggaagctctggtgacatgggcttacaaggaccaaagggtctccctggtctgcctggacaa
cctggaattccgggttctcctggaattccattttcatttggtttagataatctcagcact
gccttcagggctctgatggactcaagtggtgtgttcaggacagagacctatgcaaattct
gactttctactattgaatcaggaaggagagatctttaagactctgcactacctcagcagc
ctcgtccagaacatcaaaaaccctctgggaaccagggaaaaccctgttcaaatatgcaga
gatcttatgaactgtgaacagaagataagcgatggcacttactggattgatccaaacctt
ggctgttcttcggatactattgaagtcatgtgtgacttcactcaaggtggacagacctgt
ctcaagcccgtcacggtctcaaagctggagttcgatgttggtcgagtccaaatgaatttt
cttcatctcctaagttcagaggtagtccagcacatcactattcactgtttgaacatgacc
atttggcaagaagtagcagctgagaagccctcacatacagcagtacgcttcaaggcctgg
aacggacaggtttttgaggcaggaggacagtttcaaccagatgttttggtggatgactgt
atgctccaggatggactctggcaccaaactctcttcctatttcggacgcaggatgcccac
cagttaccaattgtcagcatatacaaccttccaccatcacagccaggaaagttgtaccat
ctagaagtcggccctgtctgtttcctctga
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integrated database retrieval system
