Geotrypetes seraphini (Gaboon caecilian): 117368340
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Entry
117368340 CDS
T09159
Symbol
POLD1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03030
DNA replication
gsh03410
Base excision repair
gsh03420
Nucleotide excision repair
gsh03430
Mismatch repair
gsh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117368340 (POLD1)
03410 Base excision repair
117368340 (POLD1)
03420 Nucleotide excision repair
117368340 (POLD1)
03430 Mismatch repair
117368340 (POLD1)
03440 Homologous recombination
117368340 (POLD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsh03032
]
117368340 (POLD1)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117368340 (POLD1)
Enzymes [BR:
gsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117368340 (POLD1)
DNA replication proteins [BR:
gsh03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
117368340 (POLD1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
117368340 (POLD1)
MMR (mismatch excision repair)
DNA polymerase delta complex
117368340 (POLD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
117368340
NCBI-ProteinID:
XP_033817804
UniProt:
A0A6P8SG11
LinkDB
All DBs
Position
10:146433274..146548493
Genome browser
AA seq
1110 aa
AA seq
DB search
MDGKRKKPGVAGGPPASQAKRSRGDWDDDGPSQFEEELAFLDEVEAEIAMERKEMQPAQD
ALPVGKLFLPVLNPKWPRPAPPTIDPETTSLCFQQLELDHFVGTHVTGMPGATQGPVPVI
RMFGLTMEETSVCCHVHGFAPYFYVPAQLGFKPEHLSDFQKELNNAVIGDMRSNKDNVSQ
AVLATEICMKESIYGFHGKKFLPFLKITMALPRLLAPAKRLLEQGLRCGPLPLHCYQAYE
TNIDFEIRFMVDTDVVGCNWIELPAGKYRLRKELSNGDTSKDVLGKVSLSQIEVDVSWTD
FISHPAEGEWQKIAPLRVLSFDIECAGRKGVFPEPDKDPVIQIANMVLRQGERDPFIRNV
FTLNSCASIVGSQVLCFQREDELLKAWAEFVRVTDPDILTGYNIQNFDIPYLINRAQTLK
AATFPFLGRIQTMRSVVRDSSFQSKQMGRRENKVINMEGRIQFDLLQVLLRDYKLRSYTL
NAVSYHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLEKLMCVINYME
MARVTGVPLSYLLARGQQIKVVSQLLRQAMKQDLVMPVVKSDGGEDYTGATVIEPLKGYY
DVPIATLDFSSLYPSIMMAHNLCYTTLLHTGSVEKYDLSPNDFIKTPTGDQFVKNSVRKG
LLPEILENLLIARKRAKAELKKEQDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCL
EISQSVTGFGRQMIEKTKQLVETKYTLANGFKADAKVIYGDTDSVMCKMGVQSVAEAMEI
GQEAAEWVSSHFTPPIKLEFEKVYFPYLLINKKRYAGLYFSSSSHTHDKMDCKGIETVRR
DNCPLVANLINTCLQKILIDRDPLGAVEHAKDVISDLLCNRIDISQLVITKELTRTADEY
AGKQAHVELAERMRKRDPGSAPNLGDRVPYVIIGAAKGVAAYMKSEDPIYVLENNIPIDT
QYYLEQQLAKPLLRIFEPILGDAKAETVLLKGEHTRCKTVLTSKVGGLMAFAKKRTTCIN
CKAVLSDNGALCNYCKQKESELFQKEISHLGLLEEKFSRLWTQCQRCQGSLHEDVLCTSR
DCPIFYMRKKVQKDLEDQEKLMQRFGAPAW
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggatgggaagaggaagaaaccaggcgttgctggggggcccccagcatcccaggccaag
cggtccagaggggactgggatgacgatggtccgtctcagtttgaggaggagctggcgttc
ctggatgaggttgaggcagagatagccatggagcggaaggaaatgcagccagctcaggat
gcacttcctgttggaaagctctttttgcctgtgttgaatcccaagtggccaagaccagca
ccccctacgattgacccggagacgacttcactctgcttccagcagcttgaactggatcat
tttgtgggaactcatgtcactggaatgcccggagccacacagggtcctgtccctgttatt
cgaatgtttggactcaccatggaggaaactagtgtctgctgtcatgtgcatggcttcgct
ccctacttctatgtgcctgctcagcttgggttcaagccggagcatctgagtgacttccag
aaagagctgaacaatgcggtgatcggagacatgcggtctaacaaggacaatgtatcccag
gcggtgctggccacggagatctgcatgaaagagagtatatatggcttccatgggaagaag
ttcttgccattcctcaagatcaccatggctctgcctcgcctcctggcgcctgccaagcgt
ctgctggaacagggtttgcgctgtggcccgctgcctcttcactgctaccaggcctatgaa
accaacatcgactttgaaatcagatttatggtggatacggatgttgttggttgtaactgg
atcgagcttcctgctggcaaatatcgactgagaaaggagctttcaaatggagacacgagc
aaggatgttctggggaaggtctcgctttcccagattgaagtggatgtgagctggacagat
tttatcagccaccctgcagagggggagtggcagaaaattgctcctctccgtgttcttagc
tttgacattgaatgtgctggcaggaaaggtgtcttcccagagccggataaagaccctgtg
atacagatcgccaacatggtgttgcgccagggggagagggacccattcatccgtaatgtc
ttcacgctaaactcctgtgccagcattgtgggttcccaggtcctctgtttccagcgggag
gatgagctcctgaaggcctgggcagaatttgtgcgtgtcactgatcctgatattctgact
ggctacaacattcagaactttgacataccctacttgataaatcgagctcagacattaaag
gctgccacattcccattcctgggtcggattcagacgatgaggtcagtagttcgggactct
tccttccagtccaagcagatgggccgtcgagagaacaaagtcattaacatggagggacgt
attcagttcgacctgctgcaggtactgttgcgggactataagttgcgttcgtatactctg
aatgcggtgagttatcacttcctgcaggagcagaaggaggatgtacagcattccatcatc
actgacttgcagaacggtaatgaacagacacggcgtcgattggctgtgtactgcttaaaa
gatgcctacctccccctacgcctgctggagaaactcatgtgtgtcattaactatatggag
atggctcgtgtgactggcgttcccctcagctatttgcttgcgcggggccagcagatcaag
gtggtgtcgcagcttctgagacaggccatgaagcaggatctggtcatgccagtagtgaag
tcagatggaggagaggattacaccggtgccactgtcattgaacccctgaaagggtactat
gatgtgcccatcgctacactggatttctcttctctatatccctccatcatgatggcccat
aacctatgttacaccacccttctgcatacaggctctgtcgagaaatatgatttatccccc
aacgacttcatcaaaactcctactggagaccagtttgttaagaactcagtgaggaagggg
ctgcttcccgaaatcttggaaaatctgctcattgctcgcaagagggccaaggcggagctg
aagaaggagcaagatccctttaaacagaaggtgttagatgggcgccagctggctctgaaa
gtcagcgcaaactctgtgtacggtttcacgggggcgcaggtgggcaagctgccctgcctg
gagatctctcagagtgttacgggatttggccggcaaatgattgagaaaaccaaacagctg
gtggagaccaagtacaccctcgccaatgggttcaaagccgatgccaaggtcatttacggt
gacacagattcagtgatgtgtaaaatgggggtgcagtcggtagcagaagctatggagatt
ggacaagaggcagcagagtgggtgtccagccatttcacaccccccatcaagctggagttt
gagaaggtgtattttccttatctactgattaataagaagcggtatgctggtctgtacttc
tcctccagctcccatacccatgacaaaatggactgtaagggcatcgagaccgttcgcaga
gacaattgccccctggtggccaatctcattaacacctgcctacagaagattctcattgac
agagaccccctgggcgctgtggaacacgccaaggacgtgatatcggatctgctctgcaat
cgtattgatatctctcagctggtgatcacgaaggaactgacgaggacagcggacgagtat
gcagggaaacaggcccatgtggagctggctgagaggatgcgaaagcgggacccaggaagt
gctcccaacctgggcgaccgtgttccctatgtgatcattggagccgccaagggtgttgcg
gcgtacatgaaatcggaggatcccatctatgtgctggagaataatatccccattgacacg
cagtattacctggagcagcaactggccaaacctctccttcgaatcttcgagccaatcttg
ggggatgccaaagcggaaactgttctgctgaaaggggagcacactcgctgtaagaccgtg
ctgacttccaaggtcggaggtctgatggcttttgctaagaagcgaactacttgcatcaac
tgcaaagctgttctgagtgacaatggtgctctctgtaattattgcaagcagaaggagtcg
gagctgttccagaaagagatttcgcacctgggtttgctggaagagaagttctcccgtctc
tggacacagtgtcaacgttgccagggcagcttacatgaagatgtcctatgtaccagccgg
gattgccccattttctacatgcgtaagaaagtgcagaaggatctagaagaccaggagaag
cttatgcaacgcttcggagctccagcgtggtga
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