Geotrypetes seraphini (Gaboon caecilian): 117368431
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Entry
117368431 CDS
T09159
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117368431 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117368431 (COL5A1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117368431 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117368431
NCBI-ProteinID:
XP_033817972
UniProt:
A0A6P8SHR2
LinkDB
All DBs
Position
10:59613650..60044309
Genome browser
AA seq
1859 aa
AA seq
DB search
MGMDTHTRWKRRSWIRHCSLTVIITLYLFSYSNAAEPADLLKVLDFHNLPDGITKTTGLC
ANRKSSKGPDVAYRVSKNAQLSAPTKQLYPASPFPEEFSILTTVKPKKGSQSFLVSIYNE
QGIQQIGVEMGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIAISVQKKSVTLILD
CTKKIIRPLERSEHPIIDTNGIIVFGTRILDEEVFEGDIQQLLIVPDAKAAYDYCEHYSP
DCDTSVPDVPQSQDPKPDEYEPEPDQDSVDGGTAENYYYEYPYYEDVDETEKAESTTVKP
DEVMRPITEVEQETLPPTTEAPTPVTTKVETRVQNKPEVDPNVDDYNYEILTEEEYYTPL
PYSPYEDINYGEIEETHETETVNGGAEAGEVPTDTVVTVNTSRPEDGGTGSNNREGDGDF
VEETIQEYDTDKDIYYDNYYDTGTSTRTEIGPGMPANQETEFEGVNGLRGEKGQKGEPAI
IEPGMLVEGPQGPEGPAGYTGPPGPTGSSGPAGDPGERGPPGRSGLPGADGLPGPPGSMM
MLPFRFSGGGDSGAKGPQVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPLGPPGITG
LKGETGDLGPQGPRGPQGTSGPTGKPGRRGRSGSDGARGMPGQTGPKGDRGFDGLAGLPG
EKGNRGDPGPSGLPGPPGEDGERGDDGDVGPRGLPGEPGPRGLLGPKGPPGPSGPPGVSG
MDGPVGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPFGKLGLPGMPGADG
PPGHPGKEGPSGEKGTLGPTGPQGQIGYPGPRGVKGADGLRGLKGTKGEKGEDGFPGFKG
DMGLKGDRGEVGPAGPRGEDGPEGPKGRGGPSGDSGPLGPIGEKGKLGVPGLPGYPGRQG
PKGSNGFPGFPGANGEKGARGTPGKVGSRGQRGPTGPRGERGPRGTTGKPGPKGNSGGDG
PSGPIGERGPPGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVG
PQGPTGETGPLGERGHPGPPGPPGEQGLPGLSGKEGSKGDPGPAGLPGKDGSPGLRGFPG
DRGLPGPIGSPGLKGNEGPLGPSGPAGSPGERGASGPAGPIGLPGRPGPQGPPGPAGEKG
APGDKGPQGPSGRDGIQGPVGLPGPAGPVGPPGEDGDKGEIGESGQKGGKGDKGEQGPPG
PTGTQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFAGPPGPVGIQGLPGPPGEKG
ETGDVGQMGPPGPPGPRGPAGAPGSDGPQGPPGGIGNPGPVGEKGEPGESGEPGHSGEAG
PPGPKGERGEKGEAGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGETGPSGQDG
PHGDKGDDGEAGQPGSPGPTGEPGPSGPPGKRGPLGPEGPEGRLGEKGAKGEPGLEGPSG
KTGPIGPQGSPGKPGSEGLRGIPGPVGEQGLPGSPGPHGPPGPMGPPGLPGLKGDSGPKG
EKGHPGLIGLIGPPGEQGEKGDRGLPGSQGSSGAKGEQGINGPSGPLGPPGPRGVPGAPG
PKGFKGSTGPTGPKGESGVQGPPGPPGPPGEVIQPLPIHASKRAKRNIDASQLVDEGNPD
NYMDYADGMEEIFGSLNSLKQEIEQMKHPLGTQSNPARTCKDLQLCHKDFPDGEYWIDPN
QGCSRDSFKVYCNFTAGGETCIFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSE
GNPIGVVQMTFLRLLSASAHQNITYNCYQSVAWHDATTNNYDKAIRFLGSNDEEMSYDNN
PFIRAVVDGCATKKGYQKTILEINTPKVEQAPVVDIMFNDFGDPAQKFGFEVGPVCFLG
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgggcatggatacacacacaaggtggaaaaggagaagctggatacggcactgctccctc
actgtaataataaccctctatctattttcatacagcaatgcggctgaacccgcagatctc
ttgaaggtattagattttcacaatttacctgatggtataacaaaaacaacgggactttgt
gcaaacagaaaatcttcgaaaggacccgatgttgcatatagggtatcaaaaaatgctcag
cttagtgccccaacgaagcagctgtaccctgcatctccgttccctgaagaattctccatt
ttaaccactgtaaaaccaaaaaaaggaagtcagtcctttctggtctccatttataatgag
caagggatccaacagattggtgtggagatggggaggtcccctgtattcctgtatgaagac
cacacgggcaaacctggacctgaggactaccctctctttaggggaattaacctgtctgac
ggcaaatggcatagaatagcaatcagcgttcagaagaaaagtgtgactttaattctggat
tgtactaagaagataattaggcctttggagagaagtgagcaccctatcattgacaccaat
ggcatcattgtatttgggaccagaatattggatgaggaagtatttgagggggatattcaa
cagcttttgattgtaccggatgccaaagcagcctatgattattgcgaacactacagccct
gactgtgacacctctgttcccgatgtaccccagtctcaggaccctaaaccggatgaatat
gaaccagaaccagaccaagattccgtggatggaggaacagcggaaaattattactatgag
tacccttactatgaggatgtggatgaaacagagaaagcagaatcaactacagttaagcca
gatgaagtcatgagacccatcactgaggttgaacaggaaaccctccctccaactacagaa
gcaccgacccctgtcaccactaaagtggaaactagagtgcaaaacaagcctgaagtggat
cctaatgtggatgattataactacgaaatcctgacagaggaagagtactataccccctta
ccttattcaccctatgaagatatcaactacggagagatagaagagacccatgagactgaa
acagtaaatggaggggcggaagcaggagaagtcccaactgacaccgtggtcaccgtcaac
acttccagacccgaggatggaggaacggggagtaacaatagggaaggtgatggagatttc
gttgaggagacaatccaggaatatgacacggacaaggatatttattatgataactactat
gatactgggacttccacaagaacagagattgggccaggcatgcctgccaaccaagaaaca
gagtttgaaggggttaatggcctgcgaggagagaaggggcagaagggagagcctgctatc
attgaaccgggcatgcttgtcgaaggacctcaaggaccagaaggcccagctgggtacaca
ggtcctcctggtccaacaggatcttctggtccagcaggcgaccccggtgaaaggggccca
ccaggacggtcaggtcttcctggagctgatggtttgccaggacctcctggatcaatgatg
atgctaccgttccgtttctcaggtggtggagatagtggagctaaaggacctcaggtgtcg
gcacaggagtctcaggctcaagccatactgcagcaggcccgattggcactgaggggacct
gctggcccaatgggtctcactggacggccagggccactaggtccaccaggcattacaggc
ttaaagggggaaactggagatctaggtcctcagggtccacgtggtcctcaaggtacttca
gggccaacagggaaacccggccgcaggggtcggtcaggcagcgatggagccaggggaatg
ccaggacagacaggaccaaagggtgaccgaggttttgacgggctggcaggattgcctggg
gagaaaggcaaccgaggtgatccaggtccttcaggacttccaggacctcctggagaggat
ggtgaaaggggtgatgatggagatgttggaccaagaggattgcctggtgaacctggacct
cgtggcttgcttggacccaaaggacctcccggcccttctggaccacctggtgtgtctggt
atggatggtccagttggtcccaagggtaatgtgggtcctcagggtgagccaggcccacca
ggacagcagggaaatccaggagcccagggtcttccaggtccacaaggtgcaattggtcca
ccaggagaaaaaggaccgttcggtaaactgggtcttcctggcatgcctggtgcagatggc
cctccgggtcatcctggcaaagaaggtccttctggagagaaaggcactctgggtccaact
ggcccacaaggtcaaattggatatccagggcctcgaggggtgaagggggctgatggtctt
cgtggtttaaagggcactaaaggagaaaagggtgaagatggcttcccaggatttaaaggt
gatatgggccttaaaggagacaggggtgaggttggccctgctggtcccagaggtgaagat
ggtccagaaggtccaaaaggccgtggtggaccttctggtgattctggcccacttggtcct
attggagaaaagggaaaacttggagttcctgggttacctggttatcctggaagacaaggc
ccaaagggttccaatggatttcctggatttcctggagctaatggagaaaaaggagcaagg
ggcacacctggtaaagtaggatcaagggggcaacgaggtccaacgggtccacgtggggaa
agaggtcctcggggtaccactggcaagcctggccccaagggtaactctggtggtgatggc
ccatctggtcctataggtgaaaggggaccaccaggacctcaaggacccactggatttcct
ggaccgaagggtccccctggtccaccagggaaagatggattgcccggtcatcctggacag
cgaggtgaaactggtttccaaggcaagacaggtcctcctggtcctcctggtgtagttggt
ccacagggtcctaccggagaaactggtccattgggcgaacgagggcatcctggcccccct
ggtcctcccggtgaacaagggctccctggcctttcagggaaagaaggatcaaagggtgac
ccaggtcctgctggtttacctggaaaagatggttctcctggattgagaggatttcctggg
gacagaggtcttcctggtccaattggttctcctggattaaaaggcaatgaaggtcctcta
ggtccctcaggtccagcaggttctcctggtgaacgaggtgcatcaggtccagccgggcca
attggtttgccaggaagaccaggacctcagggaccaccaggacctgctggtgaaaagggt
gctccgggagataaaggtcctcaaggtccatcaggacgggatggtattcaaggccctgtg
ggtcttccaggtccagcaggtccagttggccctcctggtgaagatggagacaagggtgaa
attggagaatcaggccaaaagggaggaaaaggtgacaaaggggaacagggtccaccaggc
cccactggcactcaaggtccaattggtcaaccaggtccatctggagctgatggtgaacca
ggtccaaggggacaacaagggctctttggccagaagggtgatgaaggtccacgaggtttt
gctggccctccagggccagttggcatacagggattgcctggcccacctggtgaaaaagga
gagactggtgatgttggacaaatgggtccccctggtcccccagggcccagaggcccagct
ggagctcctggatctgatggtccacagggccccccagggggcattggtaatcccggacca
gtaggagaaaagggtgaacctggagaatctggtgagcctgggcactctggtgaagctggc
ccgcctggtcctaaaggtgaaagaggtgaaaagggagaagccggtccatccggtgctgct
ggtccacctggccctaaaggtcctccaggagatgatgggcccaagggtagtcctggtcca
gttgggttccctggtgatcctggtccccctggagagactggcccttcgggtcaagatggt
ccacatggtgataagggagatgatggtgaagctggtcagccggggtctccaggtccaacg
ggtgaaccaggcccatcaggtcctccaggcaaacgaggtcctttaggcccagaaggtcct
gaaggaagactaggagagaaaggagcaaagggagaacctggtttagaagggccatctgga
aagacaggacccattgggccccagggatctccaggtaaaccaggctctgaaggtcttcga
ggaattcctggtcctgtgggtgaacaaggtcttccaggatcccctggccctcatggtcca
cctggtccaatgggtcctcctgggttacctggtcttaagggagattccggccccaaaggt
gaaaagggtcatccaggtttgattggtctcattgggccaccaggtgagcaaggtgaaaag
ggtgaccgaggtctgccaggttctcagggttcatcaggtgctaaaggagaacagggtatt
aatggcccatctggcccactcggtcctcccggtccccgtggtgtaccgggtgctccaggt
ccaaagggttttaaaggatccacaggtccaactggtccaaagggtgaatctggtgttcag
ggcccacctgggcctccaggtcctcctggagaagtcattcaaccattgcctatccatgct
tcaaagagggcaaaacgtaacatagatgcaagccagctggtcgacgagggcaacccagac
aattatatggattatgccgatggcatggaagaaatctttggctcattgaactccctgaaa
caggaaattgagcaaatgaagcatccactgggcactcaaagtaacccagctcgcacctgt
aaggatctgcagctctgccataaagactttccagatggtgaatactggattgatcctaac
caaggctgttcaagggactctttcaaagtttactgtaatttcacagctggtggagaaacc
tgtatcttccctgataagaaatccgaaggggctagaatcacttcctggccaaaggagaac
ccaggctcttggttcagtgaattcaagcgtggtaaactgctctcatatgtggattcagag
ggcaatccaattggagtggtacagatgaccttcctgcggcttctgagtgcctctgcccac
cagaatattacctacaattgctaccagtctgtagcatggcatgatgccactacaaacaac
tatgataaagccatccgcttcctgggttccaatgatgaggagatgtcctatgataacaac
ccgttcataagggctgttgtcgatggctgtgcaacaaagaaaggctatcaaaagaccatc
ctggaaatcaacactcctaaggtggaacaggcaccagtagtggatattatgttcaatgac
tttggagatccagcacagaaatttggctttgaggtgggaccagtctgcttcctgggatag
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