Geotrypetes seraphini (Gaboon caecilian): 117368882
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Entry
117368882 CDS
T09159
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsh03021
]
117368882 (CHD1)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117368882 (CHD1)
Transcription machinery [BR:
gsh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117368882 (CHD1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117368882 (CHD1)
SLIK complex
117368882 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
117368882
NCBI-ProteinID:
XP_033818552
UniProt:
A0A6P8SWT8
LinkDB
All DBs
Position
1:421965..1043783
Genome browser
AA seq
1811 aa
AA seq
DB search
MEPLLKERIANYLELENHGRKCFVPASSIPVPVSSFPAASIQASNSQSESGTGSGSSSGS
SSNGSSSESGSSDSDSGSESSRQSESESDASREKKNIQANPAKVDGAEFWKSSPGILAVR
RSAVLRKQQQRTLSNSGSEEDSSGTDSEDGSSSENKKKKHDEDWQMSGSGSESRSGSNSS
SDSDFQDDGERSLCEKSESDYEPNHNFKSKKSQNRAKTKTGKKFAGQKKRQVDSSDDDYD
KRGSRRQATVNISYKEDEEMKTDSDEVLEIHGEDVPQPEEDEFETIERVMDSRFGRKGAV
GATTTIYAVEADGDPNGGYDRSDEPGETQYLIKWKNWSSIHNTWETEETLKQQNVKGMKK
MENFKKKDQETKRWLKSASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPD
YFCKWQGLPYSECSWEDGALIGKKFQTHIDEYINRNQSKTMPFKECKVLKQRPRFVALKK
QPSYIGGNDTLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFSEHQ
LYGPFLLVVPLSTLTSWQREIQIWAPQMNAVVYIGDINSRNMIRTHEWMHPQTKRLKFNI
LLTTYEIVLKDKSFLGSINWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQN
SLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPA
KVEQILRVEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPP
EGIELSNRQDALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQ
FPFQRLDGSIKGELRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNP
QNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVL
HTGSTPSSSAPFNKEELAAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEGGP
LTVGDELLSQFKVANFSTMDEDDIVEPEKNSKNWEEIIPQDQRQKLEEEERQKELQEIYL
LPRMRNCAKQISFNRNESRRSRNRRYSGSDSDSIPERKRPKKRGRPRTVPRENIKGFSDA
EIRRFIKSYKKFGGPLERLDAIARDSELVDKSETDLRRLGELVHNGCIKALKDSTSGPER
TGGRRGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSIPSDAEERKKYTIPCHTRAAHF
DIDWGKEDDANLLIGIYEYGYGSWEMIKMDPDLNLTQKILPDDPDKKPQAKQLQTRADYL
IKLLNKDIARKEAQRLAGAGNSKRRKTRTKKNKTVKITKVKEEIKSGSSPSLSEKSDEER
EDDKEEVASVKLLNKKKIEKENEEIIESESSAKKETEEKRESKEKENKKESKKEKEDRKD
VKEKEAKEKREKLKELVLKEKESKDEKVNEIKSDNKEKTKKIIAAETPVHITASSDPVPI
SEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECL
KEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQHNDQNISSSVNSYT
VRNSDVERLKENTNHDDSSRDSYSSDRHLLQYHDHLHKERHQGEIYKTNDSRKRPYPAFN
NGKDHRDWDHHYKQESRYYNDGKYRKLDDHRSRDHRSNLEGNIKDNRSHSEYRLNSDHHS
SSEYSHQKSTRDYRYHSDWQMDHRASSSDPRSPLDQRSPYDSRSPLGHRSPFEYSSDYKS
TPEHIWNSRKT
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggaacctctgctgaaggaaaggatagcaaattacctggaattagagaatcacgggagg
aaatgttttgtccctgctagctccatccccgtccctgtgagctctttcccagcagcatcc
atacaagcctcaaacagccaatctgagtctggtactggatcaggatcaagctctggaagc
agcagtaatggaagcagcagtgaatcaggtagcagcgattcagatagtggttcagaatca
agcagacaatcagaatctgagtctgatgcatcccgagaaaagaaaaatattcaagccaat
cctgccaaagttgatggagcagagttttggaaatcaagtccaggaattctggcagtacgg
agatctgcagttctcagaaagcagcagcaacgaacgttatcaaatagtggatcagaagag
gattcgtctggtactgattctgaggacggctcatctagtgaaaacaagaagaaaaaacat
gatgaagactggcagatgtctggatctggctctgaatccagatcaggctcaaattcaagt
tcagattctgactttcaggatgatggagaaagaagcctttgtgagaaaagtgaatcagac
tatgaaccaaatcacaattttaaaagcaagaaatcccaaaacagagctaaaacaaaaact
gggaaaaagtttgcaggacagaaaaagaggcaagtagattcatcagatgatgattatgat
aaaagaggatctcgtcgccaggcaactgtaaacattagctataaggaagatgaagaaatg
aagacagactcggatgaagttctagaaattcatggggaagatgttcctcaacccgaggaa
gatgaatttgagacgatcgaacgagtcatggattcacggtttggacggaaaggagctgtt
ggtgcaacaaccactatctatgcagttgaggcagatggtgatcctaatggaggatatgac
agatcagatgagccaggggaaactcagtatctgattaaatggaaaaactggtctagtatt
cataacacttgggaaactgaagagacattaaagcaacagaatgttaaaggaatgaaaaaa
atggaaaacttcaagaaaaaagatcaagaaacaaagcgatggttgaaatcggcttctcca
gaagatgtagaatattacaactgccaacaagaacttactgatgacttgcataaacagtat
cagatagttgagcgcattattgctcattcaaatcagaagtcagcagcaggatatccagat
tatttttgcaagtggcaaggtctgccatactctgagtgcagctgggaagatggagctctc
attggaaaaaaattccagacccatattgatgagtatataaacagaaatcaatccaaaaca
atgcctttcaaggagtgcaaagttttaaagcaaaggcctaggtttgtagctttgaaaaaa
caaccatcgtatattggtggcaatgatactttagaactacgtgactatcagttaaatgga
cttaactggttagctcactcctggtgcaaaggtaacagttgtattctagcagatgaaatg
ggtcttggaaaaacaattcagacaatttcctttttgaattatctgttcagtgaacaccag
ctatatgggccttttctgcttgttgtacctctttctacactaacctcttggcaaagagaa
attcagatttgggctcctcagatgaatgctgtagtttatataggtgatatcaacagtaga
aatatgataagaactcatgaatggatgcatccccagacaaaacgattaaaattcaatatt
cttttaacaacttatgaaattgtcctgaaggataagtcattcctcggcagtatcaattgg
gcattcataggagtagatgaagcacatcgattgaagaatgatgattcactactttacaag
accttgatagactttaagtccaaccatcgtcttcttatcactggaactcctttgcaaaac
tctctcaaagaattatggtctttgctgcacttcatcatgccagaaaaattttcttcctgg
gaagattttgaagaagaacatggcaagggaagagaatatggttatgcaagccttcacaaa
gaacttgagccatttctgttaagaagagtaaaaaaggatgtagagaagtctcttcctgca
aaggttgaacaaattttaagagtagagatgagtgcattgcagaaacagtattacaaatgg
atcctaaccagaaattataaagctctaagtaaaggatcaaagggcagtacctcaggtttc
ttaaacatcatgatggaactcaagaagtgttgtaatcattgctacctcattaaaccacct
gagggtattgaactctctaatcgtcaggatgcattacagcatttaatccgtagcagtgga
aaattaatcctccttgacaaattgctgattcgtctgcgagaacgaggcaacagagttctc
attttctctcaaatggttcggatgctggacatccttgcagaatatttaaagtatcgtcag
tttcccttccagagactggatggttcaatcaaaggtgaattaaggaaacaagcactagat
cattttaatgcagatggatcagaggacttttgtttcttgctgtctaccagagctggaggt
cttggtataaacttggcatctgctgatactgtagttatatttgattctgattggaaccca
cagaatgatttgcaagcacaggctagagctcataggattggacaaaagaagcaggttaat
atttatcggttggtaaccaaggggtcagtagaagaagaaatcattgaaagagctaagaag
aaaatggtattggatcatcttgttattcagagaatggacacaacagggaaaacagtttta
catacaggttctactccatcaagttctgctcctttcaataaagaagagttagcagccatc
ttaaagtttggggctgaggaactttttaaggaaccagaaggtgaagaacaagaacctcag
gaaatggatatagatgaaattttgaagagagcagaaacccgtgaaaatgaagggggacca
ttgactgtaggagatgagttgctatctcagtttaaggtggctaatttttcaactatggat
gaagatgacattgtggaacctgaaaaaaattcaaagaactgggaagaaataattccacag
gatcaaaggcaaaaactagaggaagaagaaagacagaaagagctgcaagaaatttacctc
cttccaagaatgagaaattgtgcaaaacagatcagcttcaatagaaatgaaagcagacgc
agtaggaataggagatactctgggtctgacagtgattccatccctgaaaggaagcggcca
aaaaaacgggggcgaccacggacagtcccacgggaaaacatcaaaggttttagcgatgct
gagattcggaggtttatcaaaagttataagaaatttggtggccctcttgaaaggttggat
gccatagctcgtgattctgaattggttgataaatcagagactgaccttcgacgccttggg
gaactagtgcacaatggctgcattaaagctttgaaagacagtacctcaggaccagaaaga
acaggaggcagacgtggaaaggtgaaagggccaacattccgcatatcaggagtgcaagtg
aatgcaaaactagtcatctctcatgaggaggaactggcacccttacacaaatccattcct
tctgatgcagaagaaaggaaaaagtataccatcccttgccacaccagggcagctcacttt
gatatagattggggcaaagaggatgatgctaatcttttaataggaatctatgagtatggt
tatggaagctgggaaatgatcaaaatggaccctgatctcaatttaacacagaagatttta
ccagatgatccagataaaaaaccccaggccaagcagttgcaaacaagagcagactacctc
attaaattacttaataaagatattgcaagaaaagaagcacaaagacttgctggtgctgga
aattcaaagagaagaaaaacaagaactaagaaaaacaaaacagtaaaaattacgaaggtt
aaagaggaaattaaaagtggttcatctccctcattatctgagaaatctgatgaagaaagg
gaagatgacaaagaggaggttgcatcagttaaacttcttaataaaaagaagatagaaaaa
gaaaacgaagaaataatagagtcagaaagtagtgcaaagaaagaaactgaagaaaaaaga
gagtcaaaggagaaagaaaacaaaaaagaatccaaaaaagaaaaggaggacagaaaggat
gtaaaagaaaaagaagcaaaagagaagagagaaaaactgaaagagcttgtgctgaaagaa
aaagaaagcaaagatgaaaaggtaaatgaaatcaaatctgataacaaagaaaaaacgaag
aaaatcatagcagcagaaactccagttcatattaccgcaagtagtgatccagttcccatc
tcagaggagtcagaagaacttgatcaaaagacattcagtgtatgcaaagagagaatgaga
cctgtcaaagcagcactgaaacaactggataggccggagaagggtctttcagagagagaa
cagctagagcacacccggcagtgcttgatcaaaattggagatcacatcacagagtgttta
aaagagtactccaatcctgaacaaattaaacaatggagaaaaaatttatggatatttgtg
tcaaagtttacagaatttgatgcaagaaagctgcacaaactatacaaacatgcaatcaaa
aagcgacaagaatctcagcacaatgaccagaatatcagcagcagtgtgaacagttataca
gttagaaattcagatgtggaaaggctgaaagaaaatactaaccatgatgacagcagcaga
gacagttattcttctgatagacatttgttacaatatcatgaccatcttcacaaagaaaga
catcaaggagaaatttataaaacaaatgactctaggaaaaggccatacccggccttcaat
aatggcaaagaccatagagactgggatcaccattataaacaggaaagcagatattacaat
gatgggaaatatagaaaattggatgaccacaggagtagagatcacaggtcaaatctggaa
ggaaacataaaagacaataggtctcattcagaatatcgactaaactcagatcatcattcc
agctcagagtacagccatcagaaatcaactagagattacagatatcattcggactggcag
atggaccatagagcttctagcagtgaccctaggtcacctctggaccagagatctccttat
gactctagatctcctttaggacacagatctccttttgaatattcatctgattacaaaagt
acaccagagcatatatggaatagccgtaaaacataa
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integrated database retrieval system
