Geotrypetes seraphini (Gaboon caecilian): 117368905
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Entry
117368905 CDS
T09159
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gsh03036
]
117368905 (SHOC1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117368905 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Prefoldin
Motif
Other DBs
NCBI-GeneID:
117368905
NCBI-ProteinID:
XP_033818553
UniProt:
A0A6P8SQQ5
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Position
1:486583902..486867785
Genome browser
AA seq
1592 aa
AA seq
DB search
MFSAFKYHAVDYLSENVSRAKLSINWLLLPIPHYLHQNKNYCHTGLVADDKYRRPWRKDL
PTYKSLMDDSALNEWEKTFCIKDLFEKKWESSTVFRISAKNMEVVPSSNPCSQADMEDFF
HLLQNDWKEEYIHIDKFIFGATECEVKAQAFYILDDFLFIDYLGEYRKQLPSLPTLMSRL
RMFPVTDPLLNSKGEIFTEEDIFRHCLTFPSCVKPQNDKENELHSLKEDFCPLSLVDKES
LLLPVHLESTKTTNLSQLRNLPTVLELKEVLRLTPEDVSDYCTEAQIITEGFLDKLTAEI
EISQYSPKVKGTDIKDYENMLECKDPVCYKLWHQFEVEMPLTPPYSLQRVQAKSLVRELR
TEKMSPVHHNSLITTFTQKSLENSLWESEKYHISVSRLLLKVPLINEPTFQHQSTAELKR
MLSVHLESPVLTPLEPNWWRDLALNLLCTDTVEKQNTDSCSLNNLLHNETEVFTAIRGVQ
LENWLEEKAFVTEEIYLSPTGRQMLSHSSSQKLIECSPPCCGSTQKHAAFPDMHTDVSRI
REEMKKQSEAVEPMFLSNEEKKDDELALNLYTAAVEPPYSSRNQETTSNLSKGKEDDLDL
LSNFIMLRSKQIASKSQTKVIQESPYLEAPKTNTPIPKASNLVACDSTPNVETDKEAKRN
NIVIEILATATDCHAYHILEGMATPVLRKLKSMEILALMDQKFATIMFDRTRFFLKQQEK
TVSDNCKQGKPNEKEIILFKHAALVHLLVTVRDLLLMCSLDAAIEYLSRAKEKYRSILDS
CLDGIWKKLEIVQYIRKKEQEISPKITELQCQILQQLHNNHVDVQQFKVLIVVRMDSSCV
KGVLINTLKVKGLKVMDAFPEEGKEKLGCKSVLDRLVKIVDLKRDFFNVLVGLIFKKEKH
LQNDIKWHLVVFCFLGFFAKMSKLLFSTPLRACSCMIVHNRHIGADFPWAHFALVVEYDY
IENSCWIELCTALNITHISLKTSLPDSLLERNTSINSADSFLLDIQIPYVFFSSEGLLNC
PEILQLLESKYSFTFVERKSSHSLQLFGGTELYAVITIDECTVILIQNLEELNLEKSLDN
IILRLAALSNQYSYCWIILYCKARLDSEYSLKENVLHNLALIYAVLVPFGLKSEELEVKV
VITPGTEETALLIRQIADHTLMSSKRNPQEWLDKSWLSVLPSKAEQCLLAFPCVNPLVAQ
LMLHRGISLRWLLSATFDELYELFPEVPEKVLKHFSDITSLHQLSSSTSPEESQKVASSY
SNTISSSTLLDPASVLRSSFGNHEKNQPYQGYDLFDKLQYSTDPAVSRSRNTYFSQPGMA
EMESALVSVSPDHGHASCCEAPECETHGQCFLFQSNLDMVGNYGISVHSELGSDFFSSEK
RQMGSGTTASPLKYIHRGTESVDLIGMQTGKVRMEHVSNPPVFRLENLGEPVYQNINKLK
HLPLDTQMSPGLASINKWCPAENNSSMKDMPFQLNFKSFPIEHENLHITPVHKEEMLFWD
EYPSVKRSNVFEHMPCHSATNASMDMYNSLTLHHTVGDIFDRKRHSGSSSSLRGSEIKTG
IRFSPLRQLKRRRLSFEKIPGRSDGQTRLKFF
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcttttaaatatcacgcagtagactacttatctgagaatgtatcaagagca
aaactttccattaattggttattgcttcctatccctcactatctacatcaaaacaagaat
tactgtcacacaggattagttgctgatgataagtataggaggccatggagaaaagatctt
ccaacctacaaatcgttgatggatgactcagcactgaatgaatgggaaaaaacattctgt
attaaggacttgtttgagaagaaatgggagtcatccacagtcttccgtatcagtgccaaa
aatatggaagttgttccaagttcaaatccatgttcacaggcagatatggaggatttcttt
catcttctgcagaatgattggaaggaagaatatatccacattgacaaattcatatttggt
gccactgaatgtgaagtaaaagctcaagcgttttatatcttggatgactttctatttatt
gactatcttggggaatacagaaagcagctaccaagtctgcccacactcatgagcagattg
agaatgtttccagtgactgacccacttttaaatagcaaaggagagattttcacagaggag
gacatcttcaggcattgcctgacctttccaagctgtgtgaaacctcaaaatgacaaagaa
aatgaattgcattcacttaaagaggatttctgccctctctctctagttgataaggagtcc
ttgttgttgccagttcacttagaatccactaagacaacaaacctcagtcaactgagaaac
ctaccaactgtattggaacttaaagaggttttaagactcactccagaagatgtatcagac
tattgtacagaggcacaaataatcacagaaggtttcctggacaaactgacagctgaaata
gagatttcacagtacagccccaaggtaaaaggaactgatatcaaagactatgaaaatatg
ctggaatgcaaggacccagtttgttataaattatggcatcaatttgaggtagaaatgcca
ttaacaccaccatactcactacaacgagtgcaagcaaagtctctagtccgagaactcagg
acagaaaaaatgtctcctgttcatcacaactcactaattactacttttactcagaagtca
ttggagaactctttatgggaatcagaaaaataccatatttctgtcagtaggcttttgctt
aaagtacctctgattaatgaacctactttccagcatcagtcaactgcagaactaaaaaga
atgttgtctgtccatctggaatcaccagtgcttactccactggaacctaactggtggaga
gacttggcattaaatctactatgtacagatactgtagagaaacaaaatacagattcatgt
agcttaaataatctgctacataatgaaacagaagtgttcacagcaattagaggagttcag
ctagaaaactggctagaagagaaggcctttgttactgaagaaatctatctttctcctact
ggaagacaaatgctctctcattcctcttctcagaaactgattgagtgttctcctccttgt
tgtggttccacacaaaaacacgctgcttttcctgatatgcacacagatgttagcagaatc
agagaagaaatgaaaaagcagagtgaggcagtggaaccaatgtttttgtcaaatgaagaa
aagaaagatgatgagctagctttgaatctctacactgcagctgttgagcctccctattca
tcccgaaaccaggaaaccacgtctaatctgtctaaaggaaaggaggatgatttagacttg
ctgagcaactttataatgctaagatccaaacagattgcttcaaagtctcagacaaaagtt
atacaagaaagtccatatctagaagcacccaaaaccaacactccaattcctaaggcaagc
aaccttgtggcttgtgacagtactcccaatgtggaaacagataaagaagctaaaaggaat
aacattgtaattgaaatcttagccacagccactgattgtcatgcatatcatatattagaa
ggaatggccacgcctgttttaagaaaactgaaaagtatggaaatacttgccttgatggat
cagaaatttgccaccatcatgtttgaccgcactagatttttcttaaaacaacaagaaaaa
acagtcagtgataattgtaaacaaggcaaacctaatgagaaagagataattttatttaag
catgctgctttagtgcatctcttagtaactgtgcgtgatcttctattaatgtgcagctta
gatgctgcaattgaatatttgtccagggcgaaagagaagtacaggagcattttagattcc
tgtctagatggcatctggaaaaaactggaaattgtgcagtacattaggaaaaaagagcaa
gagattagcccaaagatcactgaactgcagtgccagatacttcagcagcttcataacaac
catgtagatgtacagcagtttaaggtgttaatcgtagtgcgaatggattctagctgtgta
aaaggtgttcttattaacactcttaaagtgaaaggtttaaaagttatggatgcatttcca
gaagaaggtaaagaaaagctgggatgtaaaagtgtcttagataggttagtaaaaattgta
gatttgaaaagagatttttttaatgtactagtggggctcattttcaaaaaagaaaaacat
ctccaaaatgacataaagtggcatttggttgtgttttgttttttgggtttttttgctaaa
atgtccaaattactattttcaacccctcttcgagcatgttcatgtatgatagttcacaat
cggcacatcggagctgattttccttgggctcattttgcactggtggtagaatatgactat
atagagaactcctgctggattgagctgtgtacagctctgaatattacacacatatccttg
aaaacctctcttccagactctcttctggaaaggaatacctcaataaatagtgctgatagc
ttcttactggatatacagattccctacgtgttcttttcatctgaaggacttctgaactgc
cctgaaatcctacagctactggagtcaaagtatagtttcacttttgtagaaagaaaaagt
agccattctttacagctgtttgggggaacggagctatatgctgtgatcacaatagatgaa
tgcactgtcatccttatacagaatctggaagaactgaatcttgagaagtcattggataat
atcatcttgaggctagctgcactttcaaatcagtacagttattgctggatcattttgtat
tgcaaggcaagactggattcagagtacagccttaaagaaaatgttttgcacaatttggcc
ttaatttatgctgttttggtcccttttgggctgaaatcagaagagctggaagtgaaggta
gttattacaccaggaactgaggaaacagctttactgattcgccagattgccgaccacact
ttgatgtcttctaagagaaatccccaagagtggctagacaagtcttggctctcagtccta
ccatctaaggcagagcagtgtttgcttgcatttccatgtgtgaatcctttggtggctcag
cttatgctacatagggggatttcactgagatggcttttgtcagcaacttttgatgagcta
tatgaacttttccctgaggttccagaaaaagttttgaagcattttagtgacatcacatct
ttacaccaactcagttcatcaacttctccagaagaatctcaaaaggtagcatcatcatat
agcaacacaatctcttccagcaccctcttagatcctgcttcagtcctcaggagttctttt
gggaatcatgaaaaaaatcaaccttatcaaggttatgatttatttgacaagctgcagtac
agcacagatccagccgtatctcgttccagaaatacatatttttcccagcctggaatggct
gaaatggagtctgctttagtatcggtgtctcctgatcatggccatgccagttgctgtgaa
gcaccagaatgtgagacacatggccagtgctttttgtttcaaagtaatctagacatggtc
gggaattatggtatttcagtccacagtgaactgggatcagacttcttttcttcagaaaaa
aggcaaatgggttctggaaccactgcgtcacctctgaaatatattcacagaggcacagaa
tctgtagatcttataggaatgcaaactggtaaagtaaggatggaacatgtctcaaatcct
ccagtcttcaggctagagaacttgggagagccagtctatcagaatataaataaattaaag
caccttccactggatacccagatgagtcctgggctagcctccatcaacaaatggtgtcct
gctgaaaataactcttccatgaaggacatgcctttccagctaaattttaagagctttcct
attgagcatgaaaatctacatatcaccccagtgcataaagaagagatgttgttttgggat
gaatacccatcagtaaaacgatcaaatgtatttgaacatatgccttgccattctgctaca
aatgccagcatggatatgtataatagtttgacattacaccatacagttggagatattttc
gacagaaaaaggcacagtggatcttcatcaagtctgagaggaagtgaaattaaaacaggt
ataagattttctcctctacgacagctgaaaagaagaagactgtcatttgaaaaaattcca
ggacgaagcgatggacaaactcgtctgaaattcttttga
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integrated database retrieval system
