Geotrypetes seraphini (Gaboon caecilian): 117369128
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Entry
117369128 CDS
T09159
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117369128 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsh03041
]
117369128 (PRPF6)
Spliceosome [BR:
gsh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117369128 (PRPF6)
Complex C
U5 SnRNP specific factors
117369128 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_17
TPR_8
ARM_TT21_C
TPR_CcmH_CycH
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
117369128
NCBI-ProteinID:
XP_033819053
UniProt:
A0A6P8SSD2
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All DBs
Position
11:83232174..83557495
Genome browser
AA seq
975 aa
AA seq
DB search
MASNVAAPSGSGTAVPAIPPVTGGASGLTASITGTMNKKKKPFLGMPAPLGYVPGLGRGA
TGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQADDDDEDLNDTNYDEFNGYAG
SLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLK
RKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPIPDSFFAKHLQSGENHTSVDPRQTQ
FGGLNTPFPGGLNTPYPGGMTPGLMTPGTGDLDMRKIGQARNTLMDMRLSQVSDSVSGQT
VVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQ
VARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRVYIRAAELETDI
RAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETY
ENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQW
IQDAEECDKAGSVVTCQAIIRAVIGIGIEEEDRKHTWMEDADSCVSHNALECARAIYAHA
LQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPA
ARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSASTARVFMKSVKLEW
VLGNIKAAQDLCEEALNHYEDFPKLWMMKGQILEQEELSEMAREAYNQGLKKCLHSIPLW
LLLSRLEEKIGQLTRARAILEKSRLKNPKNPELWLESVCLEYRAGLKNIANTLMAKALQE
CPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHR
TVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENTEPRHGELWCQVSKDIQNWQHKI
GEILLLVAAKIKNAF
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaacgtcgcagcgccgagtggctccgggacggcggtaccggccatcccgcct
gtaaccggcggagcttcaggccttaccgcctccatcactggtaccatgaacaaaaagaag
aagcctttcctcggcatgcctgctccgcttggatatgtgccgggcctaggcagaggggcc
actggttttacgacccgttctgatattggtcctgcccgagatgctaatgacccagtggat
gatcgccatgctcctccagggaagaggacagtgggggaccagatgaagaagaatcaggct
gatgatgatgatgaggatctaaatgatactaattatgatgagtttaatggctatgctggg
agtctgttttccagtggaccctatgagaaggatgatgaggaggcagatgctatttatgca
gccttggataaacggatggacgaaaggaggaaagagagaagggagcagcgtgagaaagaa
gagattgaaaaataccgcatggagaggcccaaaattcagcagcagttttctgatttaaag
agaaaattggctgaagttacagaagaagagtggctaagtattcctgaagttggtgatgcc
aggaacaaacgacaaaggaacccacgttatgaaaaactgacccctatcccagacagcttc
tttgcaaaacacttacagagtggggagaatcacacctctgtggatccccgacagactcaa
tttggtggactgaatactccctttcctggggggctgaacacaccttatccaggaggaatg
acacctgggctgatgactccgggcactggtgacctggacatgaggaagataggacaagcc
aggaataccctgatggatatgagactgagtcaggtgtcggactctgtgagtggccagact
gtggtggaccccaaaggatacttgactgacttaaattcaatgatcccaacacatggtgga
gacataaatgatatcaagaaagccaggctgctcctgaagtcagtgcgggagaccaaccct
catcaccctccagcttggattgcttctgcgcgtttggaagaggtcactggcaaactacaa
gtggctcgaaatcttatcatgaaaggcactgaaatgtgccccaagagtgaagatgtttgg
ctagaagctgcccgcctgcagcctggtgacacagctaaagctgtggtagctcaagcagta
cgtcacttgccacagtctgtgcgggtttatatccgcgcagcagaattggaaactgatatt
cgagcgaaaaaacgtgtgctgaggaaagccctggagcatgttccgaattctgtgcgtcta
tggaaggcagcagtagaactggaagagcctgaagatgctcgaatcatgctgagtagagcc
gtagagtgctgtcccacaagtgtggagctgtggcttgctttagcaagattggaaacatat
gaaaatgctcggaaagttctcaacaaagctcgagaaaatattcctacagaccggcatatc
tggattacagctgccaaacttgaagaagccaatggaaatacacagatggtggaaaagatc
attgacagagccattacatccttgcgggcaaatggagtggaaatcaacagggagcagtgg
attcaggatgcagaggagtgtgataaagctggcagtgtggtgacatgtcaggcaattatt
cgagctgtgattggtattgggattgaggaggaggacaggaaacacacctggatggaagat
gctgacagttgtgtttcccacaatgccctggagtgtgcccgtgcaatctatgcccatgct
ttacaggttttcccgagcaagaagagtgtctggctgagagcagcatactttgagaaaaac
cacggcaccagggaatccctggaggcgctcttgcagagggctgttgctcattgtcccaag
gcagaagtcctgtggttgatgggtgcaaagtcgaaatggctggcagaagatgtacctgct
gccaggagtattctggccctggctttccaggcaaatcctaacagtgaagagatctggctt
gctgcagtgaagctggaatctgagaacaatgagtatgagagagctagaagattactagca
aaggctcggagcagtgcgtccactgctagggtcttcatgaagtcagtaaagttggaatgg
gtgctaggaaacatcaaagctgcccaagacctctgtgaagaagccttgaatcattatgag
gattttcccaagctctggatgatgaaagggcagattctggaacaggaagagctttcagaa
atggctcgtgaagcatataaccaggggctaaagaagtgtcttcactccattccactgtgg
ctgctgctgtccaggttggaggagaaaattggacagctgacccgtgccagggctatcttg
gaaaagtctcgtttgaagaatccaaagaacccagaactttggttagagtcggtatgcttg
gagtacagggcagggttgaaaaacattgccaacacactgatggctaaagccttgcaagag
tgtcccaattcaggaatattgtggtcagaagccattttcctggaggcaaggccacaacgt
aagacaaagagtgtggatgccctgaagaaatgtgagcatgaccctcacgtgctcctggct
gtagccaagttattctggagtgagcgtaaaataacaaaggcccgagagtggtttcatcgc
acagtgaaaattgactcagatctgggtgacgcctgggctttcttctataagtttgagctg
cagcatggcacagaggagcaacaggaggaggtgcgtaaacgctgtgagaacacagaacca
cgccatggtgaactgtggtgccaagtatccaaggatatccagaactggcagcacaagatt
ggagaaattctcctacttgtggctgccaagattaaaaatgccttctaa
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