Gordonia sihwensis: P5P27_01985
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Entry
P5P27_01985 CDS
T08972
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P5P27_01985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsi03021
]
P5P27_01985
03400 DNA repair and recombination proteins [BR:
gsi03400
]
P5P27_01985
Enzymes [BR:
gsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P5P27_01985
Transcription machinery [BR:
gsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P5P27_01985
DNA repair and recombination proteins [BR:
gsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P5P27_01985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FAM92
CCDC-167
Motif
Other DBs
NCBI-ProteinID:
WFN93365
LinkDB
All DBs
Position
401136..405092
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHAELSTREAEIGVERKAILDDLEAALAERQQKLEAD
LAELEAEGAKADAKRKVRDAAERELKRMRDHANREVEALDEIWDKFTKLTPGDLIVDERL
YRELEDRFGEYFTGSMGAEAIKKLLENFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPQAMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR
PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTQKDGLTGEYT
GATDGDVERGVYSSPAEAIMAVDRGALTIQSRIKVRLTDQRPPADVEAELFPEGWTRGQP
WETVTTLGRVLFNELLPRDYPFIDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVGF
YWATRSGVTVSMSDVLVPPAKAEILERYEERADGLERKFQRGGLTPDERRDALVEIWKQA
TEEVGKALEDYYPDDNPITMIPKSGATGNMTQVRNLSGMKGLVTNPKGEFIPRPIKSSFR
EGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVVPL
GEKQPDGSIIRDAHVETSAYARTLAADAVDADGNVVVERGHDLGDPAIEALLAAGISEVK
VRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVTELFEARVPKGKAPIAEVSGRVRMEDDDRFYKITIIPDDGSDEVVYDKLS
KRQRLRVFRHEDGSERLLADGDHVEVGQQLLEGAADPHEVLRVMGPRQVQIHLVNEVQEV
YRSQGVSIHDKHVETIVRQMLRRVTIIDSGATEFLPGSLTERAEFEAANRAVVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINNRSDKLVGLKENVIIGKLIPAG
TGINRYRNIEVQPTEEARAAAYALPTYDDTYYSPDGTFGAPSGAAVPLDDYGFGSDFR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgaactgaagatcggccttgcgacggccgacgacatc
cacaactggtcgtacggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgaccaaggccaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggcgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgccgtcgac
gacgaactgcgtcacgccgagctctcgacccgcgaggccgagatcggtgtggagcgcaag
gcgatcctcgacgatctcgaggccgctctcgccgagcgtcagcagaagctcgaggccgat
ctggccgagctcgaggccgagggcgccaaggccgacgccaagcgcaaggtccgcgacgcc
gccgagcgtgagctcaagcgcatgcgcgaccacgcgaaccgcgaggtcgaggctctcgac
gagatctgggacaagttcaccaagctcaccccgggcgacctgatcgtcgacgagcgtctg
taccgcgagctcgaggaccgtttcggcgagtacttcaccggctcgatgggcgccgaggcc
atcaagaagctgctcgagaacttcgacatcgaggccgaggccgagtcgctgcgcgagacg
atccgcagcggcaagggccagaagaagctgcgcgcgctgaagcggctgaaggtcgtggcg
gcgttccagcagtccggcaactcgccccaggcgatggtgctcgacgccgtgccggtgatc
ccgccggaactgcgcccgatggttcagctcgacggtggccgcttcgcgacctccgatctg
aacgatctgtaccgccgtgtcatcaaccgcaacaaccgtctcaagcgactgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccgggccgggcaaccgcccgctgaag
tccctgagcgatctgctcaagggcaagcagggccgattccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgaagcgtcatcgtggtcggcccgcagctcaagctgcatcag
tgcggcctgccgaagctgatggctctggaactgttcaagcccttcgtgatgaagcgtctg
gtggatctcaaccaggcccagaacatcaagtcggccaagcgcatggtggagcgtcagcgc
cccgccgtctgggacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgactcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcatcgggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccacccagaaggacggtctgaccggcgagtacacc
ggtgccacggacggcgacgtggagcgcggcgtctactcgagcccggccgaggccatcatg
gccgtcgaccgcggtgcgctgaccatccagtcgcgcatcaaggtgcggctgaccgaccag
cgtccgcccgccgacgtggaggcggagctgttcccggagggctggacccgtggtcagccg
tgggagaccgtcaccaccctgggacgtgtgctgttcaacgagctgctgccgcgcgactac
ccgttcatcgacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctcgcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctgaaggacgtgggcttc
tactgggccacccgctcgggcgtcaccgtctcgatgtcggacgttctggtgccgccggcc
aaggcggagatcctggagcgctacgaggagcgggccgacggtctggagcgcaagttccag
cgcggtggtctgacccccgacgagcgtcgcgacgccctggtcgagatctggaagcaggcc
accgaagaggtcggtaaggcgctcgaggactactaccccgacgacaacccgatcacgatg
atcccgaagtcgggtgccacgggcaacatgacccaggtccgcaacctgtcgggtatgaag
ggcctggtgacgaacccgaagggcgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgttgccgagtacttcatcaacacgcacggcgctcgtaagggtctggcg
gacacggcactgcgtacggccgactcgggctacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtccgcgagaccgactgcggcaccgagcgcggcatcgtggtgccgctc
ggcgagaagcagccggacggcagcatcatccgcgacgcccacgtcgagacctcggcgtac
gcccgtacgctcgcggccgatgcggtcgacgcggacggaaacgtcgtggtggagcgcggg
cacgacctgggcgatccggcgatcgaggctctcctcgcggcaggcatctccgaggtcaag
gtccgttcggtcctgacctgtgccaccggcaccggcgtgtgcgcgcactgctacggccgt
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggcatcatcgcggcgcag
tcgatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggtggcgtcggt
gacgacatcaccggtggtctgccgcgagtcaccgagctgttcgaggcccgtgtccccaag
ggcaaggccccgatcgccgaggtctcgggccgggtccgcatggaggacgacgaccggttc
tacaagatcacgatcatcccggacgacgggagcgacgaggtcgtgtacgacaagctgtcg
aagcgtcagcgtctgcgcgtgttccgccacgaggacggcagcgagcgtctgctggccgac
ggcgatcacgtcgaggtcggtcagcagctcctcgagggcgctgccgatccgcacgaggtg
ctccgcgtgatgggcccgcgtcaggtgcagatccacctggtcaacgaggtccaggaggtg
taccggagccagggtgtgtcgatccacgacaagcacgtggagacgatcgtccgccagatg
ctgcgccgtgtgacgatcatcgactccggtgccaccgagttcctgcccggttcgctcacc
gagcgcgccgagttcgaggcggccaaccgggccgtcgtcgccgagggcggggagccggct
gccggccgaccggtcctcatgggcatcacgaaggcctcgctggccaccgattcgtggctg
tcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaacaaccgc
agcgacaagctcgtcggcctcaaggagaacgtgatcatcggtaagctgatcccggccggt
accggtatcaaccgctaccgcaacatcgaggtccagccgaccgaggaggcccgcgcagcg
gcgtacgccctgccgacctacgacgacacctactacagcccggacggcaccttcggtgcc
ccgagcggtgccgccgttccgttggacgactacggcttcggcagcgacttccgctga
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