Gordonia sihwensis: P5P27_03755
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Entry
P5P27_03755 CDS
T08972
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P5P27_03755 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsi03400
]
P5P27_03755 (mfd)
Enzymes [BR:
gsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P5P27_03755 (mfd)
DNA repair and recombination proteins [BR:
gsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P5P27_03755 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WFN93689
LinkDB
All DBs
Position
772389..775979
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTPSAPRPSLSGLTSFAFRDAAFGLLRERVGETRLDITAPDAARPLVVAQLAEISENPV
LVVTANGREADDLTTELSELLRSGPNGTSVVAQFPSWETLPHERLSPSADTVGARLAVLS
RLADPAVSPLHVVVATVRSLVQPMAPGLGAMRAVTLTEGTEAEFDGLIEKLVEMAYERVD
MVGARGEFAVRGGILDIFPTTADYPVRVEFWGDEVTDIRAFSVADQRTQPEIDTSVVQIH
PCRELVLTAEVRDRAAELASTVEDESLREILTKLSEGIPVEGMEALIPALVDGRMQMLTE
VMPDGTRVLVLDPEKVRTRAVDLARTGEEFLEASWNAAALGAAAPVAAGEPSIDLSASAY
RSVGDVERATVEAGKPWWTMSPLSAGSGEELELDLQPGPAPHGDPAELDEFMTSLRAQVA
SGGRAALIAAGRGTAMRFVDRLGEAEVPARLVEPGDELPADAVGVFHGTLRRGLVCPSAR
LVIATEADVTGARVVGVKDGRRLPAKRRNQVDPLALSAGDLVVHDQHGIGKFVEMIERTV
SGARREYLVIEYAPGKRGQPGDRLYVPMDALDQLSRYVGGEQPGLSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARHAAPGFAFSPDTPWQREMEDAFDYTETVDQMTVIGEVKADME
KPVPMDRVVVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAGQHLQTFTERMAGFP
VAVRGLSRFTDPAESKEIIAQMASGEVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYSDKQ
VAAAIRRELLRDGQVFYVHNRVSTIDKTAKHLANMIPEARVVVAHGQMGEEQLERTVQGF
WDREYDVLVCTTIIETGLDISNANTLIVDRAENFGLSQLHQLRGRVGRSRERGYAYLLYS
PDKPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKAVATEENVEVRIDLPVDAHIPVEYVEADRLRLEAYRKLASATSD
DDVDEVMSELTDRYGEPPVETQRLAAIARLRLRCRERGVAEVGLAGQSIRISPMLLLDSQ
QVRLARMYSSASYRAATHMVTLPIPRTGGVGSPRLRDTELVDYLVTFLQTIAPLES
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccccctctgcgccgcgtccctccctgtccgggctgacctccttcgcgtttcgt
gatgcggccttcggtttgctgcgggaacgagtgggcgagactcgcctcgacatcacggca
ccggacgccgcccggccgctggtggttgcgcaactggccgagatctccgagaaccccgtc
ctcgtcgtgaccgccaacggtcgggaggccgacgacctcacgaccgaactgtcggaactg
ctgcggtcggggcccaacgggacgtcggtcgtcgctcaattcccgtcgtgggagacgctg
ccgcacgagcggctctcgcccagcgccgacacggtcggtgcccggctcgcggtgctcagt
cgactggccgacccggcggtgtccccgttgcacgtcgtggtcgcgaccgtccgttccctt
gtgcagccgatggctcccgggctcggagcgatgcgcgcggtcacgctcaccgaaggcacg
gaggcggagttcgacggtctgatcgagaagctcgtcgagatggcctacgagcgcgtcgac
atggtcggtgcccgcggcgagttcgcggtgcgcggcggcatcctcgacatcttcccgacc
accgccgactacccggtgcgagtggagttctggggcgacgaggtgaccgacatccgcgcg
ttctccgtcgccgaccagcggacgcagccggagatcgacacgtcggtggtccagattcat
ccgtgccgagaactggtgctgaccgcggaggtccgggaccgggccgccgaactcgcgtcg
acagtcgaggacgagtcgctgcgcgagattctgaccaaactgtcggagggcattcccgtc
gagggaatggaagcgctgatcccggcactcgtcgacggccggatgcagatgctcaccgag
gtgatgcccgacggcactcgggtactggtcctcgatccggagaaggtgcgcacccgtgcc
gtcgatctggcgaggaccggcgaggagttcttggaggcgtcgtggaacgccgcggcgctg
ggggcagcggcgcccgtggccgcgggcgaaccctccatcgacctgtcggcgagtgcctac
cgcagcgtcggtgacgtcgaacgtgcgaccgtggaggcgggcaaaccgtggtggacgatg
agtccgctctcggcgggatcgggcgaggagctcgaactcgatctgcagcccgggccggcg
ccgcacggcgaccccgccgagctcgacgagttcatgacgtcgttgcgcgctcaggtcgcc
tcgggcggtcgtgcggcgttgatcgccgccggccggggcactgcgatgcgattcgtcgac
cgtctcggtgaggccgaggtcccggcccggctcgtggagccgggcgatgagttgccggcc
gacgcggtcggcgtcttccacggcacgctgcggcgcggactggtctgcccgtcggcgcgt
ctggtgatcgccaccgaggcggacgtcaccggcgctcgcgtcgtcggtgtgaaggacggg
cggcgactgccggccaagcggcgcaatcaggtcgacccgctggcgttgagcgccggtgac
ctggtggtgcacgaccaacacggcatcggcaagttcgtcgagatgatcgaacgcacggtc
tccggtgcccggcgcgagtacctcgtgatcgagtacgcgcccggcaagcggggacagccg
ggcgaccgcctgtacgttccgatggacgcgctcgaccagttgtcgcgctacgtcggcggc
gagcagccggggctcagcaagctcggcggttccgactgggccaataccaagcgcaaggcg
cgcaaggcggtccgggagatcgcgggcgaactggtgcagctgtacgccgcgcggcatgcg
gcaccgggtttcgcgttcagccccgacaccccgtggcagcgggagatggaggacgccttc
gactacaccgagaccgtcgaccagatgacggtgatcggcgaggtcaaggccgatatggag
aagccggtcccgatggaccgggtggtggtcggcgacgtcggttacggcaagaccgagatc
gcagtccgcgccgcgttcaaggccgttcaggacgggaagcaggtcgcggtcctggtaccg
acgacgattctcgccgggcagcacctgcagaccttcaccgagcgaatggcgggcttcccg
gtcgccgtgcgcgggttgtcgcggttcaccgatccggccgagtcgaaggagatcatcgcg
cagatggcctccggtgaggtcgacgtcgtcatcggcacgcatcggctgctgcagaccggc
gtccgatggaaagacctcggtctggtgatcgtggacgaggagcagcgcttcggtgtggag
cacaaggagcacatcaaagcgctgcgcacccacgtggacgtgctcaccatgtcggcgaca
ccgatcccgcgcaccctcgagatgtcgatggcgggtatccgcgagatgtcgaccatcctc
actccgcccgaggaacggcacccggtcctgacgtatgtcggcgcatactccgacaagcag
gtcgcggcggccatccggcgcgagctgctgcgcgacggtcaggtgttctacgtgcacaat
cgcgtctcgaccatcgacaagaccgccaagcatctcgcgaacatgattcccgaggcccgg
gtggtggtcgcgcacgggcagatgggcgaggagcaactggaacgaaccgtccagggcttc
tgggaccgcgagtacgacgtcctcgtgtgcaccacgatcatcgagaccgggctcgacatc
tcgaacgccaacaccctgatcgtcgaccgtgcggagaacttcgggctctcgcagctgcac
cagctgcgcgggcgcgtcgggcgaagccgggagcgcggatacgcgtacctgctgtacagc
ccggacaagccgctgaccgagacggcctacgaccggctcgcgaccatcgcccagaacaac
gaactcggtgccggcatggcggtggcgctcaaggatctcgagctgcgcggtgccggcaac
gtcctcggtgccgagcagtccgggcacgtcgcgggtgtcggcttcgacctctacgtgcgg
ttggtcggcgaagcggtcgaggcgtaccgagccgcggccgacggcaaggcagtggcgacc
gaggagaacgtcgaggtgcgcatcgacctgccggtggacgcgcatatccccgtcgagtac
gtggaggcggaccggctcaggctggaggcataccgcaagctggcgtcggccaccagtgac
gatgacgtcgacgaggtgatgagcgaactgaccgaccgctacggtgagccgcccgtcgag
acgcagcgtctcgctgcgatcgcgcgtctgcggctccggtgccgcgaacgcggtgtcgcg
gaggtcggtctggccggtcaatccatccggatctcaccgatgcttctgctcgacagccag
caggtccggctcgcgcgcatgtactcgtcggcgagctaccgtgccgcgacccacatggtg
acactgccgatcccgcgtaccggcggcgtcggttccccccgactccgggacacagagctc
gtcgactacctggtcacgttccttcagacgatcgcgccgctggagtcgtag
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