Gordonia sihwensis: P5P27_06135
Help
Entry
P5P27_06135 CDS
T08972
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P5P27_06135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_06135
03009 Ribosome biogenesis [BR:
gsi03009
]
P5P27_06135
Enzymes [BR:
gsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P5P27_06135
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P5P27_06135
Ribosome biogenesis [BR:
gsi03009
]
Prokaryotic type
rRNA helicases
P5P27_06135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
UvrA_inter
CMS1
P-loop_SecA
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WFN94122
LinkDB
All DBs
Position
1298366..1300156
Genome browser
AA seq
596 aa
AA seq
DB search
MSESENTSSTAPAAEKSTGFGDLGIDPGVLKALDDVGYETPSPIQAATIPPLMEGRDVVG
LAQTGTGKTAAFALPILTRLDTSARKPQALVLAPTRELALQVAEAFGSYSTYLPEVKVLP
IYGGQSYGIQLSGLRRGAQVIVGTPGRVIDHLDKGTLDLSQLEFLVLDEADEMLTMGFAE
DVERILADTPDQKQVALFSATMPAAIGRLARKYLNNPQEVTVKNKTATAQNITQKYLQVS
HQRKLDALTRVLEVEPFDGMIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTI
NQLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLF
VSPRERHLLRSIERHTRQDLEEIDLPSVDDVNAQRVAKFADSITENLASDNLDLFRGLVE
NYARENDVAMADIAAALALETRDGGFLMAPDPPKGERGDRGDRRDRAPRGGGHFATYRIA
VGRKHKVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPNDLDAETLGMLKHTKIGK
HPIDLRPDMGPPRGRGGARGSARGYEDRGRKGGYRKGGDKFGKRPARVAGRGRDSR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatccgagaacaccagctctaccgcgcccgcggccgagaagtccaccggcttc
ggtgacctcggcatcgaccccggcgtgctcaaggcgctcgacgacgtcggctacgagacg
ccgtcgccgatccaggcggcgaccatccctccgttgatggagggacgcgacgtcgtcgga
ctggcgcagaccggcaccggcaagaccgctgccttcgcactgccgatcctcacccgactc
gacacctcggcccgcaagccgcaggccctcgtgctcgcgcccacgcgcgaactggcgctg
caggtggccgaggccttcggcagctattcgacgtaccttcccgaggtcaaggtgctgccg
atctatggcggccagagctacgggatccagctgtccggcctgcgccgcggagcccaggtg
atcgtcggcacgccgggccgcgtgatcgatcatctcgacaagggcaccctcgacctgtcg
cagctcgagttcctcgtgctcgacgaggccgacgagatgctgacgatgggcttcgccgag
gacgtcgagcgaatcctcgccgacaccccggatcagaagcaggtcgcgctgttctccgcg
accatgccggccgccatcggccgcctggcgcgcaagtacctgaacaacccgcaggaagtc
accgtcaagaacaagacggcgaccgcgcagaacatcacgcagaagtacctgcaggtgtcg
caccagcgcaagctcgacgccctcacgcgggtgctcgaagtggagccgttcgacggcatg
atcgtcttcgtccggaccaagtcggccaccgaggagctcgccgagaagctgcgagctcgc
ggcctgagcgcgatggcgatcaacggcgacatggtccaggcccagcgtgagcgcaccatc
aatcagctcaaggacggttcgctcgacatcctcgtggccaccgacgtggccgctcgagga
ctggacgtcgaccgcatctcgcatgtggtgaactacgacatcccgcacgacgtcgagtcg
tacgtgcaccgcatcgggcgtaccggccgggccgggcggtcgggcaccgcgctgctgttc
gtctcgcctcgcgaacgtcatctgctgcggtcgatcgagcgccacacgcggcaggatctc
gaagagatcgatctgccgagcgtcgacgatgtgaacgcccagcgcgtcgccaagttcgcc
gattcgatcaccgagaacctcgcctccgacaatctggatctgttccgcgggctggtggag
aactacgcccgcgagaacgatgtcgcgatggccgacatcgccgcggcgctggccctggag
acccgagacggcggcttcctgatggctcccgatccgcccaagggcgagcggggcgatcgc
ggggaccggcgtgaccgtgcaccgcgcggcggcggtcatttcgccacgtaccgcatcgcc
gtcggccgcaagcacaaggtgtcgccgggcgcgatcgtcggcgcgatcgccaacgagggc
ggcctcactcgcggtgacttcggcaacatcagcatccgcgacgacttcagcctcgtggaa
ctccccaacgatctcgacgccgagacgctcgggatgctcaagcacaccaagatcggcaag
catccgatcgacctgcgcccggacatgggtccgccgcgcggtcggggaggcgctcgcgga
tcggcgcgcggatacgaagaccgcggccgcaagggcggttaccgcaagggcggcgacaag
ttcggcaagcgaccggcccgcgtggccggccgcggtcgcgacagtcgctag
DBGET
integrated database retrieval system
