Gordonia sihwensis: P5P27_07370
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Entry
P5P27_07370 CDS
T08972
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P5P27_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_07370
03009 Ribosome biogenesis [BR:
gsi03009
]
P5P27_07370
Enzymes [BR:
gsi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P5P27_07370
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P5P27_07370
Ribosome biogenesis [BR:
gsi03009
]
Prokaryotic type
rRNA processing factors
P5P27_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
WFN94353
LinkDB
All DBs
Position
1525030..1528173
Genome browser
AA seq
1047 aa
AA seq
DB search
MTDNGSSADATSADQPAEKFPLRLRVHALARTLGLTSKQVLAHLQEMGVTARTAQSSISR
ADAEAVELRISGAVEDAADEAGEPGAPSLFSAVETPQPVSTAKAEATAPLFLAADADETA
PDGEKTAEAKKAGGKKAEGKKSDGKKADSKKSDGKKADGKKTEGKKAETTDVPESDGSEK
QADKKPGKKKASAKKPKKSEVDEAGTGDETPAAPETATAPVEPESEVPAAGGEDDEQTSG
ESESRSRRRRRGRRGRGRGRGDQGPEGSDSESDDAQDGVESDQNTAETSGPEKNGPDDDT
ADADQTQADATGSESDEETEADSEAAVPSSKRRRRRRRRRGGSDSDETVSADDPPNTVVH
EREPRAKKVRDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESEFLARRESVERVMV
VRERAASGAGDGHDQHAAPVEDYTQIAVLEDGVLVEHFVTTETSQSMVGNIYLGRVQNVL
PGMEAAFVDIGRGRNGVLYAGEVNWEAAGLDGGSRKIEQALKPGDHVLVQVSKDPIGHKG
ARLTTQISLAGRYLVYVPGGTSTGISRKLPDTERKRLKQILAKLVPDEAGVIIRTASEGV
SAEELGADIERLEAQWKSIEAAADEHRSKAPGTPKALYEEPDLLVRVVRDLFNEDFRKLV
VEGERAWSQVSGYVNDVAPDLAERLERFTKAHADAPDSFTVHRIDEQLAKALDRKVWLPS
GGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVD
FIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTA
CSGRGVIVHANPVEVRPADDGSRNGGDGGSRKSRRSRRRGGDQQPQQEAAPAKPAPHKPA
AEHPLFRAMAHPDDHDEHDAAAEPAADTSVPEVKAPEVENAEVEIAEVAVAEVAATDGAV
SEVAAEVVVETMTQTPEPPVAVVTRRRRRAVRRAAAPTTAVESVDEVVEHEPVTTVAEQS
AEPVVAVTRSPRRRSGRRAAGPPPAQQ
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
gtgacagataacgggtcgtcggctgatgccacttcggcagatcagccagcggaaaaattc
ccccttcgactccgcgtgcatgcgctcgcccgcacgctcggactgaccagcaagcaggtg
ctcgcgcacctgcaggagatgggggtgacggcgcgcaccgcgcagtcgtcgatctctcga
gccgacgccgaagccgtcgagctccgtatcagtggtgccgtcgaggatgcggcagatgag
gccggagagccgggggcgccgtcgctgttctcggcggtcgagacgccgcagccggtgtcg
acggcgaaggccgaggcgaccgcgccgctgttcctggcggcggacgccgatgagaccgct
ccggacggtgagaagacggccgaagccaagaaggccggcggcaagaaggccgaaggcaag
aagtcggacggcaagaaagccgacagcaagaagtcggacggcaagaaagctgacggtaag
aagaccgagggcaagaaggccgagaccacggacgtcccggaatcggatgggtccgagaag
caggccgacaagaagccgggcaagaagaaggcgtcggcgaagaagcccaagaagtccgag
gtcgacgaggcaggcaccggtgacgagacgccggccgctccggagaccgccacagcgccc
gtcgagcccgagtcggaggttccggcagccggcggggaggatgacgaacagacgtccggc
gagagcgagagccggtcccgcaggcgcaggcgcgggcgtcgcgggcgcggtcgcggtcgc
ggcgatcagggccccgagggatccgacagtgagtcggacgacgctcaggacggcgtggag
tcggaccagaacaccgccgagacgagcggtcccgagaagaacgggccggacgacgacacg
gccgatgcggaccagacacaggccgatgcgaccggatcggagtcggacgaagagaccgag
gcggactccgaggcagcggtcccgtcgagcaagcggcgtcgccgccggcgccgccgccgt
ggcgggtccgactcggatgagacggtctcggcggacgatccgcccaacaccgtggtccac
gagcgtgagccgcgcgccaagaaggtgcgtgacgaggtgcagggcatctcgggttccacg
cggctggaggcgaagcggcagcgcaggcgagacggtcgtgacgccgggcggcgtcgtccg
ccgatcctgaccgagtcggagttcctggcgcgccgggaatcggtggagcgcgtgatggtg
gtgcgtgagcgcgccgcctccggtgcgggcgacggccacgatcagcatgcggcgccggtg
gaggactacacgcagatcgccgtcctggaggacggcgtgctggtggagcacttcgtcacc
accgagacctcgcagtcgatggtcggcaacatctacctggggcgcgtgcagaacgtgctt
ccgggcatggaagccgccttcgtcgacatcggccgcggacgcaacggcgtcctctacgcc
ggcgaggtcaactgggaggccgccggcctcgacggcggttcgcgcaagatcgaacaggct
ctcaagccgggcgaccacgttctggtccaggtcagcaaggacccgatcgggcacaagggc
gcacggctgacgacgcagatctccctcgccggccggtacctggtgtacgtgccgggaggg
acgtcgacgggtatcagccgcaagctccccgacaccgagcgcaagcgtctcaagcagatc
ctggccaagctcgtcccggacgaggccggcgtcatcatccggaccgcgtccgagggcgtc
agcgccgaggaactcggcgcggacatcgagcgcctcgaagcacagtggaagagcatcgag
gcggcggccgacgagcaccggtcgaaggcaccgggcactccgaaggcgctgtacgaagag
ccggatctgctggttcgagtggtccgtgacctgttcaacgaggacttccgcaagctggtc
gtcgagggcgaacgcgcatggtcgcaggtatcggggtacgtcaacgacgtcgctcccgac
ctcgccgagcggctcgaacgcttcaccaaggcgcatgccgacgcgcccgactcgttcacc
gtgcaccgcatcgacgagcagctggccaaggcgctcgaccgcaaggtgtggctgccgtcc
ggcggcacgctgatcatcgagcacaccgaggcgatgacggtggtcgacgtgaacaccggc
aagttcaccggctcgggcggcaacctcgaggagaccgtcacgcgcaacaatctcgaagcc
gccgaggagatcgtgcggcagatgcgcttgcgcgacatcggcggcatgatcatcgtcgac
ttcatcgacatggttctcgaatcgaaccgcgacctcgttctgcgacggctcaccgaggcc
ctggccagggaccggacgcggcaccaggtctccgaggtcacctcgctgggactggtgcag
atgacccgcaagcggctcggcaccggtctcctcgaggcgttctcgaccacctgtaccgcg
tgctccggtcgcggggtgatcgtgcacgccaatccggttgaggtacgcccggctgacgac
ggaagccgcaacggcggcgacggaggttcacgcaagtcgcgccgctcgcgtcggcgcggg
ggagaccagcagcctcagcaggaggcggcgccggccaagcccgcaccgcacaagccggcc
gccgagcatccgctgttccgcgccatggctcatccggacgaccacgacgagcacgacgcg
gcggccgagccggccgccgatacctcggtgcccgaggtgaaggcgcccgaggtcgagaat
gccgaggtcgaaatcgctgaggtggccgtggccgaggtcgctgccacagacggtgcagtg
agcgaagtcgcggcggaggtcgtcgtcgagacgatgacgcagacaccggagccgccggtg
gcggtggtgacgcgtcgacgtcgtcgcgcagtacgccgtgcggccgcaccgacgacggcc
gtcgagtcggtggacgaggtcgtggagcatgagccggtgacgacggtggccgaacagtcc
gccgagccggtggtcgcggtcacgcgctcgccccggcggcgcagtggtcgccgcgccgcg
gggccgccgcccgcgcagcagtga
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