Gordonia sihwensis: P5P27_07875
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Entry
P5P27_07875 CDS
T08972
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P5P27_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_07875
03016 Transfer RNA biogenesis [BR:
gsi03016
]
P5P27_07875
Enzymes [BR:
gsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
P5P27_07875
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P5P27_07875
Transfer RNA biogenesis [BR:
gsi03016
]
Prokaryotic type
tRNA degradation factors
P5P27_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_5
Motif
Other DBs
NCBI-ProteinID:
WFN94448
LinkDB
All DBs
Position
1630089..1632356
Genome browser
AA seq
755 aa
AA seq
DB search
MTDVNADFDDSITEVSAVIDNGSFGKRTIRFETGRLALQAAGSVTAYLDEGTMILSTTTA
SKSPKEHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDG
LRNEIQIVETVLSLDPKDLYDVVAINAASASTQISGLPFSGPVGAVRVALIPTEQNKAGQ
WVAFPTVEQLEGAVFDMVVAGRLIDGGDVAIMMVEAEATDNVLALIADGAQAPSEAVVAE
GLEAAKPFIATLCEAQKQLAAAAAKETREFPLFPAYQDDAYEAVAEFATTRLGEAMAIAD
KQERDNATDALKGDVLEALGERFEGRESELGAAYRSLTKKLVRQRILTDHFRIDGRGITD
IRALSAEIGVVPRAHGSALFERGETQIMGITTLDMVKMAQQIDSLGPETSKRYMHHYNFP
PYSTGETGRVGSPKRREIGHGALAERALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSV
CASTISLLNAGVPLKAPVAGIAMGLVSDEVTIDGKTETRYVALTDILGAEDAFGDMDFKV
AGTKDFVTALQLDTKLDGIPSKVLAGALSQAKQARLTILDVLAEAIDEPDEMSPYAPRIT
TIKIPMDKIGELIGPKGKTINGITEETGANISIEDDGTVFIGAADGPSAQAAIDKVNAIA
NPQLPKVGERFLGTVVKTAAFGAFVSLLPGRDGLVHISKLGNGKRIGKVEDVVKVGDKLQ
VEIADIDERGKISLVPVRDSADAAEGAKDEVAVDA
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgtcaacgccgacttcgatgattcgatcaccgaagtctccgccgtcatcgac
aacggatcgttcggcaagcgcacgatccgcttcgagaccggccgcctggctctgcaggcc
gcgggttcggtgaccgcgtacctcgacgagggcacgatgatcctctcgacgaccaccgcg
tccaagtcgccgaaggagcacttcgacttcttcccgctcacggtcgacgtcgaggagcgc
atgtacgccgcgggtcgcatccccggctcgttcttccgccgcgagggccgcccgtcgacc
gacgcgatcctcacctgccgcctcatcgaccgtccgctgcgtccgtcgttcgtcgacggc
ctgcgcaacgagatccagatcgtcgagaccgtcctgtcgctcgaccccaaggacctctac
gacgtggtcgcgatcaacgcggcgtccgcatccacgcagatctcgggtctgccgttctcc
ggtccggtgggcgccgtgcgcgtcgcgctgatcccgaccgagcagaacaaggccggccag
tgggtcgccttccccaccgtcgagcagctcgagggcgcggtcttcgacatggtcgtcgcg
ggacgcctgatcgacggcggcgacgtcgcgatcatgatggtcgaggccgaggccaccgac
aacgtcctcgcgctgatcgccgacggcgcccaggcgccgagtgaggccgtcgtcgccgag
ggcctcgaggccgccaagccgttcatcgccaccctgtgcgaggcgcagaagcagctcgcc
gcggccgccgcgaaggagacccgcgagttcccgctgttcccggcctaccaggacgacgcc
tacgaggcggtcgccgagttcgccaccacccgcctcggcgaggcgatggcgatcgccgac
aagcaggagcgcgacaacgcgacagacgcactcaagggcgacgtgctcgaggcgctcggc
gagcgcttcgagggccgcgagagcgagctcggcgcagcctaccggtcgctgaccaagaag
ctcgtgcgtcagcgcatcctcaccgatcacttccgcatcgacggtcgcggcatcaccgac
atccgtgcgttgtccgccgagatcggcgtcgttccgcgcgcacacggcagcgcgctgttc
gagcgtggcgagacccagatcatgggcatcacgaccctggacatggtcaagatggcccag
cagatcgattcgctcggccccgagaccagcaagcggtacatgcaccactacaacttcccg
ccgtactcgaccggtgagaccggccgcgtgggttcgcccaagcgccgcgagatcggtcac
ggtgcgctcgccgagcgtgccctggtgccggtgctcccgagcgtggaggagttcccgtac
gcgatccgtcaggtctccgaggccctcggctccaacggctccacctcgatgggctcggtg
tgtgcgtcgaccatctcgctgctgaacgcgggcgttccgctgaaggcgccggtcgcaggc
atcgcgatgggcctcgtctccgacgaggtcaccatcgacggcaagaccgagacccgctac
gtcgccctgaccgacatcctcggagccgaggacgcgttcggcgacatggacttcaaggtc
gcgggcaccaaggacttcgtgacggctctgcagctcgacacgaagctcgacggcatcccc
tccaaggtcctggccggtgcgctgagccaggccaagcaggcccgtctcaccattctcgac
gtgctggccgaggccatcgacgagccggacgagatgagcccgtacgcgccgcgcatcacc
accatcaagatcccgatggacaagatcggtgagctgatcggcccgaagggcaagacgatc
aacggcatcaccgaggagaccggcgccaacatctcgatcgaggacgacggcaccgtgttc
atcggcgccgcagacggcccgtccgcgcaggcggcgatcgacaaggtcaacgccatcgcc
aacccgcagctgccgaaggtcggcgagcgcttcctgggcaccgtcgtcaagacggccgcc
ttcggcgccttcgtctccctgctccccggccgcgacggactggtccacatcagcaagctg
ggcaacggcaagcggatcggcaaggtcgaggacgtggtcaaggtcggcgacaagctgcag
gtcgagatcgccgacatcgacgagcgcggcaagatcagcctcgttccggtgcgcgacagc
gccgatgcggccgaaggcgcgaaggacgaggtcgcggtcgacgcctga
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