Gordonia sihwensis: P5P27_07975
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Entry
P5P27_07975 CDS
T08972
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P5P27_07975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_07975
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P5P27_07975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
WFN94467
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Position
1648829..1650730
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AA seq
633 aa
AA seq
DB search
MADNSNNTAGDNSGNGNADGGGRKGGGRRRASRKAGPPADHPNKARAADSGAAKLPPQVA
AATGSSVTGDVIDRLPAPPKLPKGGLRVVALGGIGEIGRNMTVFEYDGKLLVVDCGVLFP
EDQQPGVDLILPDFGYIEDRVEDIEAVVLTHGHEDHIGAVPFLLKLRGDIPIVGSRFTLA
LVAAKCREHRLRPKLVQVAEGDRLSHGGFDCEYFAVNHSIPDALAVAIRTPAGLVLHTGD
IKLDQLPLDNRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKAR
QRVIVASFASHVHRIQQIVDVAHRHGRRVTFVGRSMVRNMQIAQDLGYLTVPDGVVVDMD
TAATLPDHRLVLISTGSQGEPLSALSRMARGEHRQINIRADDLVVLASSLIPGNENSVFA
VVNGLAKRGATVVTQASAKVHVSGHASAGELLYLYNAVRPSNAMPVHGEWRHLRANAALA
EATGVPADRIVLAEDGVVVDLVDGRARITGRVPVGYVYVDGLSVGDVGESTLSDRLVLGE
GGFISISVAVDASTGAAVSKPTVSGRGFSDDPGALNDAAELVNKALVELANEGVTDTHRI
AQGVRRAVGRWVAEKYRRRPMIVPTVIAVGERR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacagcaacaacaccgccggcgacaacagcggtaacggcaacgccgacggg
ggcggccgcaagggcggcggtcgtcggcgggcctcacgcaaggcgggcccgcccgccgac
cacccgaacaaggcgcgggcggccgattcaggtgccgcgaaactgcctccgcaggtggcc
gcggccaccggatcgagcgtcacgggcgacgtcatcgaccggctgcccgccccgccgaag
ctgcccaagggcggactccgcgtcgtcgcgctcggcggcatcggtgagatcggccgcaac
atgaccgtcttcgagtacgacggcaagttgctcgtcgtggactgcggcgtgctcttcccc
gaggaccagcagcccggcgtcgacctgatcctgcccgacttcggctacatcgaagaccgc
gtcgaggacatcgaagcggtggtcctgacgcacggccacgaagaccacatcggcgcagtg
cccttcctgctcaagctccgcggcgacatcccgatcgtcggttcccggttcacgctcgca
ctggtcgcggccaagtgccgcgaacaccgcctgcggccgaagctggtccaggtggccgag
ggcgatcgcctctcgcacggcggattcgactgcgagtacttcgcggtgaaccactcgatc
cccgacgcgctcgccgtcgcgatccgtacgccggccggtctggtcctgcacacgggcgac
atcaagctcgatcagctgccgctggacaaccgtctcaccgacctggccggcttcagcaga
ctcggcgacgagggcgtcgacctgttcctggtggactcgaccaacgccgaggtccccggt
ttcgtcacccccgagcgtgagatcggcggcgtcctcgacaccgtcatcggcaaggcccgc
cagcgcgtgatcgtcgcctcgttcgcgagccacgtccaccggatccagcagatcgtcgac
gtggcacaccggcacggtcggcgcgtgaccttcgtcggccggtcgatggtccggaacatg
cagatcgcgcaagacctcggttacctcaccgtgccggacggcgtggtggtggacatggac
accgcggccaccctgcccgaccaccggctggtgctcatctccaccggctcgcagggagag
ccgctctcggccctctcgcgcatggcccgcggtgagcaccgccagatcaacatccgcgcc
gacgacctcgtggtcctcgcgtcgtcgctgatcccgggcaacgagaactccgtgttcgcc
gtggtgaacggtctcgccaagcgcggcgccaccgtggtgacccaggccagcgccaaggtc
cacgtctccggccatgcctccgcgggcgagttgctgtacctctacaacgcggtgcgcccg
tcgaatgccatgcccgtgcacggtgaatggcgccacctgcgcgccaatgccgcgctcgcc
gaggccacaggggttcccgccgaccggatcgtcctcgccgaggacggagtggtcgtcgac
ctggtggacggacgcgccaggatcaccggccgcgtgccggtcggatacgtctacgtcgac
ggactctcggtcggcgacgtcggggaatcgacgctctcggaccgcctcgtgctcggcgaa
ggcggcttcatctccatctcggtggcggtggacgcgtcgacgggtgccgcggtgagcaag
ccgacggtgtccggccgcggcttctccgacgatcccggcgccctgaacgacgccgccgaa
ctggtgaacaaggcgctcgtcgaactggccaacgaaggggtcaccgacacccaccggatc
gctcagggcgtgcggcgcgcggtgggtcgatgggtggctgagaagtaccggcgccggccg
atgatcgtcccgaccgtcatcgcggtgggggagcggcggtga
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