Gordonia sihwensis: P5P27_08135
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Entry
P5P27_08135 CDS
T08972
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gsi
Gordonia sihwensis
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_08135 (hrpA)
Enzymes [BR:
gsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P5P27_08135 (hrpA)
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P5P27_08135 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_30
AAA_23
ABC_tran
NACHT
T2SSE
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WFN94496
LinkDB
All DBs
Position
complement(1681341..1685045)
Genome browser
AA seq
1234 aa
AA seq
DB search
MPSAIPSPDLSALTISYPPELPVSACRDEIAEAVSAHQVVVIAGETGSGKTTQLPKICLE
LGRTSIGHTQPRRIAATSVARRIADELGTEIGGTVGYQVRFSDKVGKDTRIKVMTDGILL
REIGRDPRLSGYDTIIIDEAHERSLNIDFLLGYLKQLLPTRPDLKLIITSATIEPDRFAR
HFATTADTVPILEVSGRTYPVEIRYRPRESDDSDHDDLDQIAAIDAAVGELWSHAPGDIL
VFLPTERDIRDTADALRRRSEAEIVPLFARLSVGEQQRVFAPSNGRRIVLATNVAETSLT
VPGIRYVIDAGTARISRYSTRTKVTRLPVERVSQASARQRAGRCGRVAPGICIRLYSEDD
FDARPEYTDPEILRSNLAAVILSMLSLRLGDINDFPFVQAPDPRAVRDGMAQLSELGAVT
GTDSASARLTKIGKQLARLPVDPRLGRMLVAGHDNGCLDHLLVITAALALPDVREFPSDK
REAATAAHRRHAVPGSEFLGHLKLWEYLTARRAELSSSQFRKMCEREFLHFLRIREWIDL
NRQLRRTVSDLKWQIPDTEVDPAAVHRSVLSGLLTNIGARQGDSRDYLGTRGTKFAIFPG
SFLANKPPAFVVAAELVETSRLFAHTVASIDPAWVEELAGDLVTRTYSEPHWSTRRGAVM
AYEKVSLYGVPLVAQRRVNYGSIDPKTSREIFIQEALVAGRWRNRHAFFAHNAELLRDAS
ETEHRARRRDLRISDDELFEFYAARIPSTVVSTRHFDSWWKKAGRTDPALLNLRPEDLLG
DDVPTAADYPAAWQQGETRLELRYHFEPGAPDDGVTAIIPEPLLAHVRDTGFDWLVPGMR
AELATQLIKSLPKGLRKSMSPASRYAELALSRLSVRSEPLLTGLARELSSISGVTLAPRD
FNPSALPPHLRMHFAVTGTDGAIIARGDRLAALRTDLSADADRDRRAPLHREWTADGLGT
LADSETATVAGQTITRYPTLATVPGQGVRIAKAATSTERDAGIAAAAGELLRLAIAPPSR
KLASTLPPPAKLALSQSPYPDVDALLADCTARAVTDTLAREPELAALRSPGDFGALSARL
GPVIRSRAPEYFDAAVAALAEYSPVRRAVDARSGTLAADDVSDQVNDLIFDGFVGATALE
HLRSLPRYLTAARLRLESLNTAAGRDNEAMGAIDRVVAVWNRRLAQLPAARHEALNELVQ
WRLEELRVSLFAQQLGTNGPVSEQRIIKAIDKFS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcgatcccgtctccggacctgtccgccctgacgatctcctatccgccggaa
ctcccggtcagcgcctgccgcgacgagatcgccgaggcggtctccgcacaccaggtggtc
gtgatcgcgggcgagaccggttcgggcaagacgacccagttgccgaagatctgcctcgaa
ctcggccgcacctcgatcggtcatacgcagcctcggcggatcgcggcgacgtcggtggcc
cggcggatcgccgacgagttgggcaccgagatcggcgggaccgtcgggtatcaggtgcgc
ttctccgacaaggtcggcaaagacacccgcatcaaggtgatgaccgacggcatcctgctg
cgcgagatcggccgggatccgcggctgtccggttacgacacgatcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctatctcaagcagttgctgccgacc
agaccggatctcaagctcatcatcacctcggcgaccatcgagcccgaccgcttcgcccgg
catttcgccaccaccgcggacacggtgccgatcttggaggtctcggggcggacgtacccg
gtcgagatccggtatcggccgcgcgagagcgacgactccgaccatgacgacctcgatcag
atcgcggcgatcgacgcggcggtcggcgagctgtggtcgcacgccccgggcgacatcctg
gtgttcctgccgaccgagcgcgacatccgggacacggccgatgccctccgccgacgcagc
gaggccgagatcgttccgctgttcgcccggctgtcggtcggtgagcagcaacgggtgttc
gccccgtccaacggtcggcggatcgtgctggccacgaatgtcgccgagacgtcattgacc
gttcccggcatccggtacgtgatcgatgcgggtacggcgcgcatctcccgctattcgacc
cgcaccaaggtgactcgtcttcccgtggaacgggtctcacaggccagcgcccgtcagcgc
gcgggtcgctgcggccgggtggcgccgggcatctgcatccgcctgtactcggaggacgat
ttcgacgctcgtccggagtacaccgacccggagatcctgcggagcaatctcgccgccgtc
atcctgtcgatgctgtcgctgcggctgggcgacatcaacgatttcccgttcgtgcaggcg
cccgacccgcgagcggtccgcgacggcatggcacagctgtccgaactgggagcggtcacc
ggcaccgattccgcgtccgcgcggctgaccaagatcggcaagcagctcgcgcggctgccc
gtcgacccgaggttgggccggatgctggttgccggacacgacaacggctgcctcgatcac
ctgctcgtcatcactgcggcgctggccctgcccgacgttcgggagttccccagcgacaag
cgggaggccgccaccgccgcccatcgccggcacgcggtgcctgggtcggagttcctcggg
cacctcaagctctgggagtatctgacggccaggcgcgcggaactctcaagcagccagttc
cgcaagatgtgcgagcgagagttcctgcacttcctgcggatccgcgaatggatcgatctg
aaccggcagctgcggcgcaccgtcagcgacctcaagtggcagatcccggacaccgaggtg
gacccggcagccgttcatcgcagcgtgctctccggcctgctgaccaacatcggtgcgcgg
caaggcgactcacgcgactatctgggcacccgaggcacgaagttcgcgatcttccccgga
tccttcctcgcgaacaaaccgcccgccttcgtcgtggccgccgaactcgtcgagacctcg
cgcctgttcgcacacaccgtggcctcgatcgatccggcctgggtcgaggagttggccggc
gacctggtgacgcgcacctactccgagccgcactggtccacccgccgcggcgcggtgatg
gcgtacgagaaggtcagcctgtacggagttcccctggtggcacagcgccgcgtgaactac
gggtcgatcgacccgaagacctcgcgcgagatcttcatccaggaggcactggtcgccgga
cgctggcgtaaccgtcatgcgttcttcgcccacaacgccgagttgctccgcgacgcgtcc
gagaccgaacatcgcgcgcggcgtagggacctgcgcatctccgacgacgagctcttcgag
ttctacgcggcgcgcataccgtccaccgtggtgtcgacacggcatttcgactcgtggtgg
aagaaggcgggccgcaccgatccggcgctgctcaacctccggcccgaggacttgctcgga
gacgacgtccccacggccgccgactatccggccgcctggcagcagggcgagacccgcctg
gagctccgctaccacttcgagcccggcgcacccgatgacggcgtgaccgcgatcatcccc
gagccgctcctggcacatgtgcgagacaccggattcgactggctcgtacccgggatgcgc
gccgaactcgcgacgcagctgatcaagtcgttgcccaagggtctgcgcaagtccatgtcc
ccggcgtcccggtacgccgaactcgctctcagccgactctcggtgcgcagcgagccactg
ctcaccggcctggctcgcgagctgtcgtcgatcagcggggtcaccctggctccgcgcgat
ttcaatccgtcggcactccccccgcatctgcggatgcacttcgcagtcaccggcacagac
ggcgcgatcatcgcccgcggcgaccggctcgccgcgcttcgcaccgacctgtctgccgac
gccgaccgcgaccgccgtgcgcccctgcaccgcgaatggaccgccgacggtctgggcacc
ctcgccgactccgagacggcgaccgttgcgggacagacgatcacccgctatcccacgctc
gcgaccgtgccgggacagggcgtacgcatcgcgaaggccgccacctccaccgagcgcgac
gccggcatcgccgccgccgccggagaactcctgcgcctcgcgatcgcgccgcccagccgc
aagctggcgtcgactctgccgccgccggccaagctcgcgctgagccagagcccgtatccg
gacgtggacgcgttgctggccgactgcacggcacgggcggtcaccgacaccctggcacgg
gagccggagttggccgcgctgcgcagtcccggtgacttcggcgcgctctcggcgcggctg
gggccggtgatccggtcgcgcgcacccgagtacttcgacgccgccgtcgcggcgctcgcc
gaatactccccggtgcgccgggccgtcgacgcccggtccgggactctcgccgccgacgac
gtctccgatcaggtcaacgatctgatcttcgacggcttcgtcggcgcgacggcattggag
catctgcgctcgctgccgcgctatctcaccgccgcacggctgcgcctcgagtccctcaac
accgccgccggccgggacaacgaggcgatgggcgccatcgacagggtggtggcagtctgg
aataggcgcctcgcccagcttccggccgcacgccacgaggcgctgaacgagttggtgcag
tggcgcctggaggaactccgcgtgagcctgttcgctcagcagctcggcaccaacggtcca
gtctccgagcagcggataatcaaggcgatcgacaagttcagctga
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