Gordonia sihwensis: P5P27_16090
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Entry
P5P27_16090 CDS
T08972
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P5P27_16090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsi03019
]
P5P27_16090
03400 DNA repair and recombination proteins [BR:
gsi03400
]
P5P27_16090
Enzymes [BR:
gsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P5P27_16090
Messenger RNA biogenesis [BR:
gsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P5P27_16090
DNA repair and recombination proteins [BR:
gsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P5P27_16090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
MarR_2
RecQ_Zn_bind
TrmB
Motif
Other DBs
NCBI-ProteinID:
WFN92277
LinkDB
All DBs
Position
3364231..3366327
Genome browser
AA seq
698 aa
AA seq
DB search
MVTSPPQQLTPPQREIADQVITSLAGPDARLRADQETAVAALAAPGARVLVVQATGWGKS
AVYWAATAVIRAAGGGPTLIVSPLLSLMRDQVAAATRGGLRAATVNSANIDEWSAIEGAL
LDGSLDVLLVSPERLANPGFGRRVLEALAGRLGLVVIDEAHAISDWGHDFRPDYRRVSDV
LQRLNPQTSVLATTATANARVTDDVAAQLGDATLVLRGPLARKSLHLNVIDGLDPLQRYA
WVAQELPMLPGSGIVYVLTVADADRLVRAIRAVHGDELAVAAYTGGLPAEERHRLEDDLL
AGRVKALIATSALGMGFDKPDLGFVVHVGAPPSPVSYYQQVGRAGRALDEAVVMLLASRL
DDAIWEHFATATIPDPARMERLLQTLGDADGPMTVPGLESATGIRRGRVELMCKQLAVDG
VVERSSEGWSVTGKPWVYDAEHYEGVLAVRRREADIMRSFIRGEKCLMRLLTESLDDPRS
QDCGRCSVCRGEITPGLAEAPETRVVAEVGAVLRRDAELLEPRKMWPGGAFGSRGRIPPG
AMAEPGRVLAFADAPQWRDVLDAAKAGDPEASSALAEAAVTVVAQWGRSSGVRPDVIYSL
DLTGGTLAATLAQRLREVGRRTGDALPVQPGPRPGREATGADEAAYWRDHLGPMPAVSGA
VLLVIDETGSGWPVTLAAAALRESGASAVLPLVVHKTA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccccaccgcagcagctcactcccccgcagcgggagatcgccgatcaggtc
atcacctcgctcgccggccccgacgcccggctgcgggcggaccaggagactgcggtggca
gccctggccgcgcccggcgcccgcgtgctcgtggtgcaggccaccggctggggcaagtcc
gccgtgtactgggcggccacggccgtcatccgtgcggccggcggcggaccgaccctcatc
gtctcgccactgctgtcgctgatgcgcgaccaggtggcggcggccacgcgcggcggactg
cgtgctgccacagtgaattcggcgaatatcgacgaatggtcggccatcgagggcgcgttg
ctcgacggttcgctcgacgtactgctcgtgtcgcccgaacggctcgccaatccgggtttc
ggtcgccgcgtgctcgaagctctcgccgggcggctcggcctggtcgtgatcgacgaggcc
cacgccatctccgactggggacacgatttccgtcccgactaccggcgcgtgtcggacgtg
ctgcagcggctgaatccgcagacctccgtgctggcgaccactgccaccgccaacgcccgc
gtcaccgacgacgtcgcggcgcagctcggcgacgccacgcttgtcctgcgcggcccgttg
gcacggaagtcattgcatctcaacgtgatcgatggactcgacccactgcagcggtacgcc
tgggtggcacaggaactaccgatgcttcccggttccggaatcgtctacgtgctcaccgtc
gcggacgccgatcgccttgtccgggcgatccgcgccgtccacggggacgaactcgcggtc
gcggcctacaccggcggactgcccgccgaggaaaggcatcgcctcgaagacgatctgctc
gcgggccgcgtcaaagctctcatcgcgacgtcggcgctcgggatgggtttcgacaaaccg
gatctggggttcgtcgtgcatgtgggagccccgccgtctccggtctcgtactaccagcag
gtgggccgtgccggccgtgcgctcgacgaggcggtggtgatgctcctcgcctcccggctc
gacgacgcgatctgggagcatttcgccaccgcgacgatccccgacccggcgcgcatggaa
cgactgctgcagacgctgggcgacgccgacggcccgatgacggtcccgggcctggagtcc
gcgaccggtatccgccgcggccgcgtggaactgatgtgcaaacagttggcggtcgacgga
gtggtcgagcgatcgagcgaggggtggtcggtcaccgggaagccctgggtgtacgacgcc
gagcactacgagggcgtcctcgccgtccggcgtcgcgaggccgacatcatgcgctcgttc
atccgcggcgagaagtgcctcatgcggctgctgaccgagtccctcgacgatcctcgctcc
caggactgcgggcgctgctcggtgtgccggggcgagatcacccccgggctcgccgaggca
ccggagacccgggtcgtcgccgaggtcggagccgtgctgcggcgcgacgccgaactcctc
gaaccccgcaagatgtggccgggcggcgccttcggcagccgcggccggatcccgcccggc
gccatggccgaaccgggacgggtgctggccttcgccgacgcaccccagtggcgcgatgtc
ctcgacgccgcgaaggcgggcgacccggaggcgtcgagcgcgctcgccgaagccgccgtg
accgtggtcgcgcagtggggacggtcgtcgggagtgcggccggacgtgatctactcgctc
gacctcacgggcggcacgctggccgctaccctcgctcaacgactgcgcgaggtgggccgc
cgcaccggcgacgcgctcccggtgcagcccggcccgcggcccggccgagaggccaccggc
gcggacgaggcggcgtactggcgcgatcacctcgggcccatgcccgctgtgtcgggcgcg
gtgctcctggtgatcgacgagaccgggtccggctggccggtcaccctcgccgccgcggca
ctgcgcgagtccggggcctccgccgtcctgccgctggtggtccacaagaccgcgtga
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