Glycine soja (wild soybean): 114367085
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Entry
114367085 CDS
T06057
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114367085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114367085
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114367085
mRNA degradation factors
5'-3' decay
Decapping complex
114367085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
GerPC
Motif
Other DBs
NCBI-GeneID:
114367085
NCBI-ProteinID:
XP_028179978
LinkDB
All DBs
Position
9:1273709..1284611
Genome browser
AA seq
1407 aa
AA seq
DB search
MASSSGNPNQQQQPQPQQLQQQNFDFNKLFKAPTTSSPSIPNPSNLNSSPSFPAPSPSTP
PPSSYPTPSSSYPPPTGTYPYHHPHFLPYPALHHHHHQQQQQQHQEHPLILHHLPQMHAP
QRPSIFQPSSPSPSSPHLPSSPNPPTGARLMALLGTQNPPSNQEPSSVVYSSPSPSPVVS
DFSVPPASTQQPSGSPVNLASPQSTPTRMLSTKLPKGRHLIGEHAVYDIDARVPGEVQPQ
LEVTPITKYASDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINTALRYLLRGHTQRVTDM
AFFAEDLHLLASASTDGRIFVWKINEGPDEDDKPQITGKVILALQILGESESVHPRVCWH
PHKQEILMVAIGNRILKIDSMRAGKGKFFSAEEPLKCSIDKLIDGVQLVGKHDGNVTELS
MCQWMKSRLASASADGTVKIWEERKATPLAVIRPHDGKPVNSVTFLTAPHRPEHIVLITA
GPLNQEVKIWVSDNEEGWLLPSDSESWNCIQTLDIRSSFEANPEDAFFNQVVALSRAGLY
LLANAKKNTIYAVHIEYGSNPTATRMDYIAEFTVTMPILSLTGTSDSLPDGEHIVQIYCV
QTQAIQQYGLNLSQCLPPPLDNVELEKTESHLSRAFDALDGSMETGNMPQVLCGSSESAP
VVSVAVNLPSSDISGLPEASISSISDSETKSNDLPPRNGFELVHSASPPLPQSPRLSPKL
SGLKNSSNNLETSSTSADHSSEQTNLDSSAEQKVESKKDMADVPGSGDNLRKDDKVVQSD
VSVVSNAPTTYKHPTHLVTPSEIFSNAALSSDNSHNSQGMNGQDVAAHRDAENSQVDVEV
VGETDSIQENTEYERDRDSHTNVAEKKEKLFYSQASDLGIQMARETYNIEGACQADNIKT
INAPDQSGNSVEEEIQDTSKDVPANISESETVAAAVQSPAPSVKGKRQKGKNSHVSGASS
TSPSPFNSTDSSNDQGGNSGGSSMEAALPQLFAMQEMMSQLLSMNKEMQKQMNAMVSVPV
TKEGKRLEGSLGRNMEKVVKAHTDALWARLQEENAKQEKLERDRTQQITNLISNYVNKDM
VSILEKIIKKEISSIGTTITRSISQVIEKTISSAITESFQKGVGDKALNQLEKSVSSKLE
ATVARQIQAQFQTSGKQALQEALKTSVEASVVPAFEMSCKALFEQIDIKFQNGLVKHTTA
IQQQFDSTHSPLAMTLRDTINSASSITQTLSGQLADGQRKLLAIATNSKVAADPFVAQIN
NGLHEMTEDPTKELSRLISEGKFEEAFTGALHRSDVSIVSWLCSQVDLARILAMVPLPLS
QGVLLSLLQQLSCDINTETPKKLTWMTDVAAAINPADPRIAAHVRQILDQVSRTLGHHRI
LPTTSPSEASTIRLLMHVINSVLLSCK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcatctgggaatcctaatcagcagcagcagccacaaccacaacaactacaa
caacaaaattttgatttcaataagcttttcaaagcaccaacaacatcatcaccctctatc
cctaatccttcaaatttgaactcttctccatcattccctgctccttctccttccacaccc
cctccttcttcttaccctaccccttcttcctcttaccctccaccaactggcacataccct
tatcaccaccctcactttctcccctatccagcccttcaccaccaccaccaccaacaacaa
caacaacaacaccaagaacacccccttatccttcaccatcttcctcaaatgcatgcccct
caaagaccctctatttttcaaccctcttctccctctccctcctccccacaccttccttca
tcccccaatccccccactggtgcacgcctcatggccttgttgggaacccaaaatcctccc
tccaatcaggaaccatcatcggttgtgtactcatctccatcaccatcacctgtggtttct
gatttctcagtgccaccagcctccacacagcagccctcagggtctcctgtgaatctggct
agtcctcagtccacaccaaccaggatgctcagcaccaaactgcccaaggggcgccacttg
atcggagagcatgctgtgtatgacattgatgcgagggtgcctggggaggtgcagcctcag
cttgaagtcactcctatcaccaagtatgcctcggatccaggcctcgtgcttggccgccaa
attgcagtgaataagtcttacatatgctatggactcaaactcggggccatccgggtgctt
aatatcaatactgcattgagatatttgcttcggggccatactcagagagtaacagacatg
gctttcttcgccgaggatcttcacctgttggctagtgctagcacggatgggagaatattt
gtatggaaaatcaatgagggccctgacgaggacgacaagcctcaaattactggaaaagtt
atcctagcacttcaaatattaggggagagtgagtcagttcatccacgagtatgctggcat
ccccacaaacaagaaattttaatggttgctattggaaaccgtatcctcaaaattgacagc
atgagagctggaaaaggtaaatttttttctgcagaggagcctctcaaatgttccattgat
aagttgattgatggggtgcaacttgttggtaagcatgatggcaatgtcaccgagttgtca
atgtgccaatggatgaagagtcgattagcttcagcatcagctgacggcacggtgaagata
tgggaagaacgtaaggcaacaccacttgctgtcataagaccacatgatggtaaacctgtt
aattctgtgacgttcttgactgctcctcaccgccctgagcacattgttcttatcacagcg
gggccactaaatcaagaagtgaagatttgggtttctgataatgaggaaggctggctattg
cctagtgattctgagtcatggaattgtattcagactttggatataagaagttcgtttgaa
gccaaccctgaagatgcattctttaatcaagttgtagcattgtcccgtgctggtctgtat
ctgcttgcaaatgccaagaaaaatacaatatatgctgttcacatagagtatggatccaat
ccaactgctacacgcatggattacattgctgagttcaccgtcacaatgcctatattaagt
cttactggaactagtgatagtttaccagatggtgagcatatagtacagatatattgtgtc
caaacacaagctattcaacagtatggactcaatttgtcacaatgtttgcctccacccctg
gacaatgttgaacttgagaaaacagaatcccatctatctcgtgcttttgatgctttggat
ggatcaatggaaactggaaatatgccacaagttctttgtggcagttctgaaagtgctcct
gttgtgagcgttgctgtaaatttgccttcatcagatatttctgggttacctgaagcttct
atatcttcgatatcagattcagagaccaagtcaaatgatttacctcctcgtaatggtttt
gaacttgtgcactctgcttcacctccacttcctcagagtccaagattgtccccgaagtta
tctggtttaaaaaattcatcaaataatttagagactagttcaacaagtgctgatcacagc
agcgagcagacaaatcttgattcttctgctgaacagaaagtggaatctaaaaaagatatg
gcagatgtacctggatcaggtgacaatttgcgaaaggatgataaagttgttcaaagtgat
gtttctgtggtttctaatgcccctacaacatataaacacccaacccatttggttactcca
tctgagatattctctaatgctgctttatcttctgataattctcataattctcaaggtatg
aacggtcaagatgtggctgcccatagagatgcagaaaactctcaagtagatgttgaagtt
gtaggggagacagattctattcaagaaaatactgagtatgaaagagacagagactcacac
acaaatgttgctgagaagaaagagaagttattctattctcaggcctccgatctgggtatt
cagatggctagagagacctataacatagagggagcttgtcaagctgataatattaagacc
atcaatgcacctgatcaaagtggtaactctgttgaggaagaaattcaagacacaagtaag
gatgtacctgcaaacatcagtgaatcagaaactgtggctgctgctgtgcaatctcctgca
ccttctgtgaaaggtaaaagacaaaaaggcaaaaattctcacgtgtctggtgcatcttcc
acttctcccagtccttttaactcaacagattcatcaaatgatcaaggtggcaattcagga
gggtcatccatggaggctgctttgccacagttatttgctatgcaggagatgatgagccag
ttattaagcatgaataaagaaatgcaaaagcagatgaatgcaatggtttctgtcccagtt
actaaggaaggcaaaagattggaaggatccttgggtcgaaacatggagaaagttgtcaag
gctcacactgatgctttgtgggctcgattgcaagaagaaaatgcaaagcaagagaagtta
gagcgagaccgtacacagcaaataacaaatttgatctccaattatgtaaacaaggatatg
gtatctatattggaaaaaatcattaagaaggaaatatcttcaattggaacaaccattact
cgttcaattagtcaagttatagagaaaactatatcatcagctattacagaatcattccag
aagggggtgggagacaaggcattgaatcaactagaaaaatcagttagttcaaaacttgaa
gctacagtggctaggcagatacaggcacaatttcaaacctctggcaagcaagctcttcag
gaagcactcaagactagtgtggaagcttcagtcgttcctgcatttgagatgtcttgcaag
gctttgtttgagcaaattgatatcaaatttcaaaatggacttgtgaagcacacaactgct
attcaacagcagtttgattctactcattctccactagccatgactttgagggatacaatt
aattcagcatcatcaatcacacaaactttgagtggacaattggctgatggccaacgtaaa
ctgctagcaattgcaactaattccaaagtagctgcagatccctttgtagcgcaaatcaac
aatggcttgcatgagatgactgaggatcctaccaaagaactatcaaggttgataagcgag
ggcaaatttgaggaagcatttacgggagcccttcatagaagtgacgtttcgatagtttct
tggttatgttctcaggttgatttagcccgtattttggcaatggtgccactgccattaagc
caaggagtacttctgtctcttctgcaacagttgtcctgtgacatcaatacagagacaccc
aaaaaattgacatggatgacagatgtggctgctgctataaacccggcagatccaaggatt
gcagcacatgtgcggcaaatattagatcaagtgtcccgaacactgggccatcatcggatt
ttaccaactacctccccttcagaagcgagcacaattcgccttctcatgcatgtcataaac
tcggtcttgttgagctgtaaatga
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