Glycine soja (wild soybean): 114367793
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Entry
114367793 CDS
T06057
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114367793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114367793
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114367793
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114367793
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114367793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
114367793
NCBI-ProteinID:
XP_028180792
LinkDB
All DBs
Position
9:1752452..1761992
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AA seq
681 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPSSAAAAPSGPLIPHDSSAASSAVSNGGPAAPAPSAVDPVG
GGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQ
QRGASYNQQAEKPLLPQGNNSTNQGVTGNPLPAELGNAQPQQQVQQSQQQVNQSQMQNVA
NGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVEN
VILIFSVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKG
VNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGR
GARPMPGMQGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDFGGPPAA
MMFRGRPSQPGMFPGGGFGMMLNPGRGPFMGGIGVGGANPPRGGRPVNMPPMFPPPPPLP
QNANRAAKRDQRTADWNDRFGSGSEQGKSQDMLSQSGGPDDDPQYQQGYKGNQDDHPDDS
ESEDEAPRRSRHGEGKKKHKI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggcggcctcgacgccgccccc
tcctccgccgccgccgccccctccggccccctcatcccgcacgactcctccgcggcctcc
tccgcggtgtctaacggaggccccgccgctcccgccccgtccgcggtggaccccgtgggc
ggcggcaacgtccccgggcggcggagcttccggcagacggtgtgccggcactggctgcgc
agcctgtgcatgaagggtgacgcgtgcgggttcctgcatcagtacgacaaggcaaggatg
ccggtgtgccgcttcttcaggctctacggagaatgccgggaacaggattgcgtctataaa
cacaccaatgaagacatcaaggagtgtaacatgtacaagttggggttttgtcctaatggg
cctgattgtcgatataggcatgcaaaatctcctggacctccacctcctgttgaggaggtc
cttcaaaagatccaacatttatattcctacaattataactcatccaacaagtttttccaa
caaagaggtgctagttataatcaacaagctgaaaaacccctgcttcctcaaggaaataat
tctacaaaccaaggggtgactggaaacccattaccagcagagttaggaaatgcccagcca
cagcaacaagttcagcagtctcagcagcaggtcaaccagagccaaatgcaaaatgttgct
aatggccagcctaatcaagcaaatagaactgcaacccctttacctcaaggaatatctagg
tattttattgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagtt
tgggcaactcaaaggagcaatgaatccaaactaaatgaagcatttgactctgtggaaaat
gtaatattaattttctcagtcaaccgtactagacatttccagggttgtgcaaagatgaca
tccaaaattggtggttctgttgctggggggaattggaaatatgctcatggaactgcacat
tatggacggaatttctctgttaaatggttgaagttatgtgaactgtcattccacaaaact
cgccatttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcag
gagctggaaccctctattggagagcagctggcatccttgctttatcttgagccggatagt
gaacttatggctatctcggttgcagcagagtcgaaacgtgaagaagagaaagcaaaggga
gtgaatccagataatggaggagaaaatccagatattgtaccatttgaagacaatgaagaa
gaggaagaggaagagagcgatgaagaggaggagagctttggtcatggtgttgggccagct
ggccaaggcagaggtaggggacgaggtatgatgtggccgcctcatatgcctctcgggcgt
ggagcccggcccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggtta
tcgtatgggcctgttggccctgatggctttggtatgccagatcttttcggtgtgggaccc
cgtggttttgctccatatggtcctaggttctctggtgattttggaggtcccccagcagcc
atgatgtttcgtgggcgaccctctcaacccgggatgtttccaggtggtgggtttggaatg
atgttgaatcctggacgcggtcctttcatgggtgggattggggttggaggtgcaaatcca
ccaagaggtggtaggccagttaatatgcctccaatgtttccaccacctccaccactacct
cagaatgcaaaccgtgctgccaaaagagatcaaagaactgctgattggaatgataggttt
ggttcaggatctgagcagggtaagagtcaagacatgctcagtcaaagtggcggacctgac
gatgacccgcagtatcagcaaggatacaaagggaaccaggatgatcatcctgatgatagt
gaaagtgaggacgaggcacctaggaggtcaagacatggagaggggaaaaagaaacacaaa
atatag
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