Glycine soja (wild soybean): 114367817
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Entry
114367817 CDS
T06057
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114367817
03015 mRNA surveillance pathway
114367817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114367817
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114367817
mRNA cycle factors
P-body specific factors
114367817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
114367817
NCBI-ProteinID:
XP_028180822
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All DBs
Position
9:complement(11398216..11414754)
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AA seq
1188 aa
AA seq
DB search
MDHQEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLLLELFFVGVIEDGGIFIN
IIKDLTSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VLRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNISSLAEALDMQPPVMPEDGHTTRVTSGEDGISSASGKDSSVVEPIWDDEDARTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKNQDQTTEILPESDKGQQTTHESGEVSTESSALPEA
ESTERVKDKEEKDKSKELDREKEKEKENDKKGENEKDKLRSVEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQ
MLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISPPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILIYGHGTQEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGALPLDIEFDLQDLFVDLRPNMVRHNSIEEVNAALVELEEHDRIVFADK
ASSEKHSDTEKSLSRTTSTTTVVGNGQSIDNGMEENGVQDDNDSETDSGSDTIDVEGHDD
EELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKMTQVDPLEEANFDQELKAVV
QESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEPLDEDTGGNKEVQVR
VLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGT
QATNWMQSVGYKGGGRGSSLEGNSGRGSGSRHRHHNYSGSGIYYSRRK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccaagaggatgaaagtaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaaaaaatccattgaggcgaagctggctttacggcaaagcaatttgaat
ccagaaaggcctgactcaggatttttaaggacattggattctagcattaagcgcaacact
gctgttattaagaaactgaagcagattaatgaagaacagcgtgaagctctgatggacgag
ttgcgaagtgtcaacttaagcaaatttgtcagtgaagccgtggctgctatatgtgatgcc
aagcttagaagttctgatatacaagctgcagttcagatctgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctggttcaagggcttctgaaagtcttctctcctggaaaa
cctggtgatgaatcagatacagacagaaatttgaaggcaatgaagaagcgcagctctcta
aagcttctactggaactcttttttgttggagttattgaagatggtggcatttttatcaat
atcataaaagatcttaccagtggggaacagctaaaagatcgggatgctgcacaaacaagt
ttgacccttctttcgagttttgctcgccaagggagaatttttcttggactttctgttagt
gggccggaaattcatgaagagttttttaaaggccttaacatcacagcagatcagaagaaa
gttttacggaaagcatgctattccttttatgatgctgcagctgaattacttcagtctgag
cattcttcacttcgcttaatggagcatgaaaattctaagattttgaatgcaaaaggagag
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgaccatttgtac
cgtaacatctcatcattagcagaagcacttgatatgcagcctcctgtaatgccagaggat
ggccacacaactagggttaccagtggtgaggacggtatttcttctgcttctggtaaagat
tcttctgttgttgaacccatatgggatgatgaagatgcaaggactttctatgaatgttta
cctgatcttagagcttttgttcctgctgtgcttttgggagaaacagagcctaaaagcagt
gaacaatctgcgaagaatcaagaccaaacaactgaaatattacctgaatcagacaaaggt
caacagaccacccatgaaagtggagaggtctctacagagtctagtgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaggaaaaagacaagtctaaagaattggacaga
gagaaggaaaaagaaaaagaaaatgacaaaaagggagaaaatgaaaaagacaaactcaga
agtgttgaagggacaaatttggatgctctactgcagaggcttccgggttgtgtgagccgg
gaccttattgatcaattgactgtggagttctgttatctaaattcaaaatcaagtcggaaa
aagcttgtgagggctttgttcaatgtaccaaggacatctctggaattgttaccatattat
tcacgcatggttgccactctctcaacttgtatgaaggatgtctcgtccattcttttgcag
atgttggaggaggaattcaacttcttaataaataaaaaggatcagatgaacattgagaca
aagataaggaacatcaggttcattggagaactttgcaagttcaaaatttcccctcctggc
ctagtcttcagttgtttgaaggcctgtttagatgattttacacaccacaacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactactata
cgtatggctaacatgttggagatactgatgcggttgaaaaatgtaaaaaacttggatccg
agacatagcactttggtggagaatgcatactacctttgcaagccaccagaaagatctgca
cgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgataagtctaccattgagcatgtgctgaggcaactccgtaagttaccttggaatgaa
tgtgaaccatatcttttgaaatgcttcatgaaggtctacaaaggaaaatatggtcagatc
cacctgattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
atcgttgatgaggtactggaggagattagagttgggctggagttaaatgactatgggatg
cagcaaagacgcattgcttacatgcgattcttgggggagctttacaactatgagcatgta
gactcatctgttatttttgagacactatatctcattctcatctatggccatgggacacaa
gagcaagatgtactggatccacctgaagattgttttcgcataaggttgatcattactctg
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcgattc
ctaatacacttccagaggtatattttaagcaaaggggcactgcctctggacatcgaattt
gacttacaggatctgtttgtggacttgcgtcccaatatggttcgtcacaattctattgag
gaagtgaatgcagctctcgtagaactcgaggaacatgatcgaattgtttttgctgataag
gccagtagtgaaaaacattctgacactgagaagtctttaagtaggaccacttccactact
acagtggttggcaatggacaaagcattgataatggtatggaagaaaatggagtgcaagat
gataatgacagtgagactgattcagggagtgacacaattgatgttgagggacatgatgat
gaagagttggatgaggagaatcatgatgatgggtgtgaaactgaggatgatgacgacgac
gacgatgatgggcctggacctgcttctgacgaggaggatgaagtccatgtgagacaaaaa
atgacccaggtggaccctctggaagaagccaattttgatcaggagctcaaggctgtagta
caggagagtatggaacagcgaaggcaggagctacgaggtcgtcctacattgaacatgatg
attccaatgaatgtatttgagggatctgccaaggatcaccatgggaggggagttggtggg
gaaagtggtgatgagcccctggatgaggatactggaggaaacaaagaggttcaggtgaga
gttcttgtgaagcgtggaaacaagcagcaaacaaagcagatgttcatcccacggaattcc
tcactggtgcagagtacaaaacagaaagaagcagcagagcttcaagagaaagaagacatc
aagaggcttgtcttggagtataatgacagagaagaagaggagcttaatggattagggacc
caggcaacaaactggatgcagagtgtaggttacaagggtggtggccgtggcagcagtttg
gaaggaaacagtggcaggggtagtggatcaagacatcggcatcataattattctggcagt
ggaatctattacagtagaagaaagtga
DBGET
integrated database retrieval system
