Glycine soja (wild soybean): 114367879
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Entry
114367879 CDS
T06057
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03020
RNA polymerase
gsj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114367879
09124 Replication and repair
03420 Nucleotide excision repair
114367879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gsj03021
]
114367879
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114367879
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114367879
Transcription machinery [BR:
gsj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114367879
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114367879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
114367879
NCBI-ProteinID:
XP_028180916
LinkDB
All DBs
Position
9:complement(6325630..6333955)
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AA seq
1192 aa
AA seq
DB search
MDLEEEQEYDEQMMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS
YTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWH
DLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH
SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKTTNQKKGA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaagaggaacaggagtacgacgagcaaatgatggaggaagaagacgacgag
gaagagatcacgcaggaagacgcgtgggcagttatatctgcatacttcgaagagaaaggc
ctcgttcgtcaacaactcgattccttcgacgagttcatccagaacaccatgcaggaaatt
gtcgatgagtcagcagatattgaaattcgacccgagtcgcagcacaatcccggtcaccaa
tccgatttcgccgaaaccatttacaagatcagtttcggtcagatttacttgagtaagcct
atgatgacggagtctgatggagaaaccgccacgttgttccccaaggctgctaggttaagg
aaccttacgtattctgctcctttgtatgttgatgtctccaaaagggtcatcaagaaggga
cacgacggtgaagaggtcactgaggcccaggatttcaccaaagttttcattggcaaggtt
cctataatgcttcggtctagttattgcaccttgtaccagaattcggagaaggatttgact
gagcttggggagtgtccgtacgaccaaggcgggtatttcattattaatgggagtgagaag
gttctgattgctcaggagaagatgagcaccaaccatgtctacgtgttcaagaagaggcag
cccaacaagtatgcctatgtggccgaagttcggtccatggcagagtcgcagaacagaccg
cccagtactatgtttgtgcgcatgctctctcggactagttccaaagggggttcttcagga
caatatatacgtgccactcttccttacattcgaacggaaattcccatcattattgtgttt
cgagcattggggtttgttgctgataaagatattctagagcatatatgttatgacttctca
tatactcaaatgatggagctgctacgtccttccctggaagaagcgtttgtaattcaaaat
caacaggttgcacttgactacattgggaaaagaggagcaactgtaggtgtgacaaaggaa
aagagaattaagtatgctaaggagatccttcaaaaggagatgctccctcatgttggcgtt
ggagaatattgtgagaccaagaaagcttactattttggatatatcattcaccggctactg
ctgtgtgcacttgggcggagggctgaggatgatagggatcattatggaaacaagaggctg
gatctggctggtcctttacttggtggtcttttcagaatgctattcagaaagctaacgaga
gatgtcaggggatatgtacagaagtgtgttgataatgggaaagatgttaatctgcaattt
gctatcaaagcaaaaaccatcacaagtggacttaaatactcacttgctactggtaactgg
gggcaagcaaatgctgcagggactagagctggagtttcacaggtgctgaatcgtttaact
tatgcatccactttatctcacttgcgaagattgaattccccaatagggcgtgaagggaag
ttggccaaaccaagacagctgcataattcacaatggggaatgatgtgtccagcagaaaca
cccgaaggacaagcctgtggactggtgaagaatctggcattgatggtctacataacagtt
ggttcagcagcatatcctattctggagtttttggaagaatggggcacagagaattttgag
gaaatctctcctgcagtgattcctcaagccacaaaaatttttgtaaatggttgctggatg
ggtatccatcgtgaccctgatatgttggtgagaacattgaaaaagctaagacgtcgggtt
gatgtgaacactgaagttggggttgtcagagatatccgtcttaaagaattgcgtatatat
acagattatggtcgttgcagtcgtcctttattcattgtggataagcaaaggcttctcata
aagaagaaggatattcatgctttacaacagagggaatcccctgaagatggcggatggcat
gatctagtgtccaagggctttatagaatatattgacacggaagaagaagagactacaatg
atttccatgacaattaatgatcttgtacaagctaggatcaatccagaagatgcatattcc
gatacttacactcattgtgaaatccacccatcactaattctgggtgtatgtgcttccatt
ataccatttcctgatcacaatcagtccccacgtaacacttatcagtctgcaatgggaaag
caagcaatgggaatatatgttacaaactaccagtttcgaatggataccttggcctatgtt
ttatattatccacaaaagccactggtcactacaagagccatggagcatcttcatttccgt
caactcccagctggaattaatgccattgtatccattgcctgttactctggttataatcaa
gaagattctgtcatcatgaaccaatcgtcaatagaccgtggattctttcggtctctgttt
ttccgttcatatagagatgaagagaagaagatgggaaccctagtgaaagaagattttggc
cgtccagatagagctaacaccatgggaatgagacatggttcttatgataagctggatgat
gatggtcttgccccaccaggcacacgagtatctggtgaggatgttatcattggaaagacc
accccaatatctcaggaggaggcacagggacaagctttacgttacacaaggcgtgatcac
agcataagcttacgtcacagtgaaactggaattgttgatcaagttttgctgaccacaaat
gctgatggattaagatttgtgaaagtaagagtgagatctgttcgtataccacagattggt
gacaaattcagtagtagacatggtcagaaggggacagtgggtatgacttatacacaagaa
gacatgccatggactgtggaaggcattacccctgatattattgtcaatccacatgctatt
ccttctcgaatgacaattggtcagcttattgagtgtatcatggggaaggtggcagcccac
atgggaaaagagggagatgcaactccttttacagatgttactgtggacaatatcagtaaa
gctctacacaagtgtgggtaccaaatgcgtggttttgagaccatgtacaatggtcataca
gggagacgtctcagtgcaatgattttccttggccctacatattaccaaagactgaagcat
atggttgatgataagatccattctcgtggaaggggtccagtgcagatcctcacaaggcaa
cctgctgagggacgctcacgagatggaggtctccgatttggagagatggaacgagattgc
atgatagctcatggagctgctcactttttaaaggaaaggttgtttgatcaaagtgatgct
tacagggtccatgtatgtgagcgttgtgggttgatagctattgcaaatctcaaaaagaat
tcttttgagtgcagggggtgcaagaacaaaactgacattgttcaggtttatattccttat
gcttgtaagctcctcttccaagagttaatggctatggccatagctccaagaatgcttaca
aaggaggtcaaaactacaaaccaaaagaagggagcctga
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