Glycine soja (wild soybean): 114368055
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Entry
114368055 CDS
T06057
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114368055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114368055
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114368055
U7-dependent histone pre-mRNA processing factors
114368055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
MBL_MAP1B
BPS
Motif
Other DBs
NCBI-GeneID:
114368055
NCBI-ProteinID:
XP_028181202
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Position
9:32200649..32220760
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL
SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE
RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLRAGGNVLLPVDTVG
RVLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL
LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFAT
LARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKEALKASLMKEEELKTSHGA
DNDISDPMVIDSGNNHVPPEVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTSEWDDF
GEVINPDDYVIKDEDMDQTAMHGGSDINGKLDEGAASLILDTKPSKVVSDERTVQVRCSL
VYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETI
DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDPLSLLPVSGAAPPHKS
VLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEGP
LCEDYYKIRDYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaagtaacgccactgtgtggagtgtacaatgagaaccctctctcg
tatttggtctccattgatggcttcaacttcctcgtcgactgtggctggaacgaccacttc
gacccttcccaccttcaacccctcgccagggtagcatcaaccatagatgctgttttgctt
tcacatgcggatacacttcaccttggtgcccttccatatgccatgaagcggcttggactt
tctgccccggtttattcaacggagcctgtctacagattgggccttctcactatgtatgac
cagtacctctcaagaaagcaagtgtcggagttcgatctgttcacgctcgatgatattgat
tctgctttccagagtgtaacgaggctaacatattctcagaatcatcatttctcaggcaag
ggagaagggatagtgattgcacctcatgttgctggacatcttctgggaggtactatttgg
aaaattacaaaggatggtgaggatgtcatatatgctgttgattttaatcataggaaagaa
aggcatttgaatggaactgttctaggttcttttgtgcgtccagctgttctaataactgat
gcttacaatgctttgaacaatcagccttacagacgtcaaaatgacaaagaatttggagat
atcttaaagaagactctaagggcaggtggcaatgtattactacctgttgacacagttgga
cgagtgttggaacttattctgatgttggaattgtattgggcagatgaaaacttgaactac
cctatatattttcttacatatgttgcatccagcacaattgattatgtgaagagtttcctt
gagtggatgagtgataccatagcaaagtcttttgaaaaaactcgtgaaaatatatttctt
ttgaagtatgtcacccttctgattaacaagactgagcttgacaatgctccagatggccca
aaggttgttctagcatccatggcaagtttggaagcaggcttttctcatgatatatttgtt
gagtgggccaacgatgtaaaaaatcttgtcctttttaccgaaagaggccagtttgccaca
ctagctcgtatgcttcaagctgatccacctccaaaagctgtcaaagtcgttgtgtccaag
cgtgtgcctttggttggggaagagctaatcgcctatgaagaagaacaaaatcgaattaaa
aaagaggctttaaaagccagtcttatgaaagaggaagaattgaaaacatctcatggggct
gataatgatattagtgatccaatggtcattgattctggcaataatcatgtaccacctgaa
gtgactggtccacgaggcggaggttaccgggacatatttattgatggatttgttccccct
tcgacgagtgttgctccaatatttccctgttatgagaatacctcagagtgggatgatttt
ggtgaggtcataaatccagatgattatgtaattaaggatgaagacatggaccagacagca
atgcatggtggaagtgatataaatggaaaactagatgaaggtgctgcaagtttgatactt
gatacaaagccatcaaaagtcgtatctgatgaaaggactgtgcaagtcaggtgttcattg
gtttacatggattttgaaggacgttcagatggaagatccattaaaaatattctctctcat
gtggctcccttgaagctggttttggtgcatggatcagctgaagctacagagcatctgaaa
cagcactgcctgaagcatgtctgtccacatgtttatgctccccaaattgaagagacaatt
gatgttacctctgatttatgtgcttataaggttcaactgtccgagaagctcatgagtaat
gtactcttcaaaaagctgggagattatgaaatagcttgggttgatgctgtagtagggaag
acagaaaatgatccgctttcgctgctccctgtttctggagcagctcctccgcataaatct
gttcttgttggtgatttgaaattggcagatatcaaacagtttctctccagcaagggtgtt
caggtggaatttgctggtggggctttgcgttgtggtgaatatgtaactcttcggaaagtt
ggggatgcaagtcagaagggtggtggttctggtgctcagcaaatagttattgagggtcct
ctgtgtgaagattactataaaattcgtgattatctctattcacagttttatttgctttag
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