Glycine soja (wild soybean): 114368491
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Entry
114368491 CDS
T06057
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114368491
09122 Translation
03013 Nucleocytoplasmic transport
114368491
03015 mRNA surveillance pathway
114368491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114368491
03041 Spliceosome [BR:
gsj03041
]
114368491
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114368491
TREX complex
114368491
Spliceosome [BR:
gsj03041
]
Complex C
Other components
EJC/TREX
114368491
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114368491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ASD1_dom
DUF2330
Motif
Other DBs
NCBI-GeneID:
114368491
NCBI-ProteinID:
XP_028181539
LinkDB
All DBs
Position
9:39935916..39937791
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AA seq
173 aa
AA seq
DB search
MSAVMDMSLDDIIKNNKKSGFGSSRGRIRPFGYGPTHRFPNRAANRAAPYATAKASKVTW
QHDLYADQHVAAAGYPAQGGRAASIEIGIKLYISNLDYGVSNDDIKLAEDLGTLPIWVFN
AGFSLNDEIDTSSIESYVQGAFDGIEFARGSPTSQWDRLRKLRRLLVGTVLES
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagtcatggatatgtcgctcgacgacataatcaagaacaacaaaaaatctgga
ttcggaagctcccgtggccgaatccgaccctttggatatggacctactcatcggttcccc
aaccgtgccgccaatcgcgccgcaccttatgccaccgctaaggcgtcaaaggtgacgtgg
caacatgatttatatgcagatcagcatgtggctgcggcggggtaccctgctcaaggtggt
cgtgcggcttccatagaaattgggatcaagctttacatttcaaacttggattatggtgtt
tccaatgatgatatcaagctagcagaagaccttgggacattgccgatatgggtgtttaac
gctggtttcagccttaatgatgaaattgatacatcatccatagaatcctatgtgcaagga
gctttcgatggcattgaatttgcaagaggctctcctacatcacaatgggaccgtcttaga
aagttaagacggttgttagttggaaccgtattagaaagttag
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