Glycine soja (wild soybean): 114370556
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Entry
114370556 CDS
T06057
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114370556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114370556
Enzymes [BR:
gsj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
114370556
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114370556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
AAA_24
AAA_29
ATP_bind_1
DUF1611
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
114370556
NCBI-ProteinID:
XP_028183741
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Position
10:complement(52642365..52646205)
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AA seq
432 aa
AA seq
DB search
MAYGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPR
LKFAVFTWYGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSVSSQG
PRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDP
VEGIPLEMPLVYFYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWI
EGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKV
RQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTR
VVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSK
YLIMGSLTWLET
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatggtggttcgggttcggcatcgacaattaagcaagtcaaattggagagagaa
agcgaactgagaatagaagttggtaacgacgcacctcttcgccttcgactccttaacggc
actgctgagatttttggcaccgagcttccacccgaaatctggctcaatttccctcccaga
ctcaagtttgctgtgtttacttggtatggtgcaaccattgaaatggatggcgctactgaa
actgattatactgcagatgagactccaatggtcagttatgtaaatgtacatgctgtgctg
gatggaagaagaagtcgtgctaaagcttcatcaccagatgattctgtttcttctcagggc
cctagggtcattgttgtaggacctactgattctggaaagagtaccttgtcaaggatgctt
cttagttgggcagctaaacaaggttggaaacctacctttgttgacctggatattggccaa
ggctctataacaattcctggatgcattgccgccactccaatagaaatgcccattgatccc
gtggaaggaattccacttgaaatgcctcttgtttacttttacgggcatgcaactccaagt
aacaatgtagaattgtataaagtgcttgttaaggagcttgcagggatgattgagaggcaa
tttactggaaatgctgaatctcgagcttcagggatggtgataaatactatgggatggata
gagggagtaggctatgatttgctcttgcatgcaattcgtacattcaaggccaatgttgtc
ttggttttgggtcaggaaaaactgtgcagtatgctcaaagatgtgctcaagagtgagccc
aaagtagacgttgttaaacttcagaggtcaggtggagttgtatctaggaatgcaaaagtc
cgtcagaaggccagaagttataggataagggaatacttctatggcctttcaaatgatctt
tctccacattctaatattgcaaattttagtgatttgtttgtttatcgagttggtggtggg
ccacaggcccctcgctcagccttgcccattggagcagaacctgctgcagatccaacaaga
gttgtacctgtaaatataaatcgtgatttgctccatttagtccttgctgtctcatttgcc
aaggaacctgatgagatcatttccagcaatgttgctgggtttatttatgtaaccgacatt
gacattcagagaaagaagataacatatcttgctccgtctgctggagaacttccaagcaaa
tatttgataatgggatccttaacatggcttgaaacatga
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