Glycine soja (wild soybean): 114372185
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Entry
114372185 CDS
T06057
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114372185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114372185
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
114372185
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
PRP4
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
114372185
NCBI-ProteinID:
XP_028185434
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Position
10:complement(103635..109548)
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AA seq
570 aa
AA seq
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MEVEKENTTSAITAEPSVSASDGQDPVSSVNASLPDPIQPVIPQVIAPSVVPPLAPIPAL
PPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDDSNARINQGGGEYEISEESRLVRE
RQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLD
AEGQLEKLMKAHEEEEAAASASIDEAEEELQYPFYTEGSKALLDARIYIAKYSLTRAALR
IQRAQRRRDDPDEDMDAEMNWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLT
GASKLWSMPKIKKHSSFKGHTERATDVAYSPVHDHLATASADRTAKYWNQGSLLKTFEGH
LDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAAS
CGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSF
YTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLG
DGGYIVTVSHDRTIKLWSSNTTDEQAMDVD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagagaaggaaaataccacatcagctattactgcagaaccctctgtatctgcc
tctgatggtcaagatcctgtttcttctgttaatgcatctttaccggatccaatacaacct
gttattccacaggttattgcaccttctgttgtacctcctttagctccaattcctgcactt
cctccccctcgcccactggcaccgcttccagttcggccaccggtcattaggccacctgtg
ccacaaaatggtgaggttggatcaagtgactcggattcagacaatgatgactcaaatgca
agaattaaccaggggggcggggagtatgagatatccgaagagagtagactggtgagagag
cggcaggaaaaggcaatgcaggagctcatgatgaagaggcgtgctgctgctcttgctgtt
cctacgaatgatatggccgtgcgagctcggcttcgacatcttggtgaaccgataactctg
tttggtgagagggagatggagagacgggacagattgcggatgattatggcgaagctggat
gcagaaggtcagctggagaagctgatgaaagctcatgaggaagaagaggctgcagcttct
gcttcgatagatgaggctgaggaagaactgcagtatcctttttacactgaagggtcaaag
gctctcctcgatgccagaatttatattgctaaatattctttgacaagggctgcattacga
attcaacgtgcacagagaagaagggatgatccagatgaagatatggatgcagagatgaat
tgggcattgaagcaggctgggaatttgagtcttgaattcagtgaaattggagatgatcgg
ccactttctggttgctccttctcaagggatggaaaatggcttgctacctgttctctgaca
ggagcttccaagttgtggagcatgcccaaaataaaaaagcattccagctttaagggtcac
acagagcgtgctactgatgttgcttattctcctgttcatgatcatttagcaactgcctct
gctgatcgaacagcaaagtattggaatcaaggatctcttttgaagacatttgagggtcat
ctagaccgtcttgcacgcattgccttccatccatcagggaagtacctgggcactgctagc
tttgacaagacatggagattatgggacatagaaacaggagacgagttgcttcttcaagaa
ggccatagtagaagtgtatatggtttggctttccacaatgatggatcattggctgcatct
tgtggactagactccctggctcgtgtttgggacctccgaactggaagaagtatccttgca
ctggaaggtcatgtcaaaccggttctcggcatcagtttttcacccaatggatatcatcta
gccacgggtggtgaagacaacacttgtcggatttgggatttgaggaagaagaaatccttt
tatactattcctgctcactctaatttaatatcacaagttaaatttgagccacaagaaggt
tactttttggtaactgcctcgtatgatatgactgctaaggtttggtcaggccgtgacttt
aagcctgtgaagacactatcagggcatgaagctaaagttacttctgtggatgttcttgga
gatggcgggtatattgttaccgtctcccatgatcgcaccataaagctgtggtccagcaat
acgactgacgaacaagctatggatgttgactaa
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