Glycine soja (wild soybean): 114375995
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Entry
114375995 CDS
T06057
Name
(RefSeq) uncharacterized protein LOC114375995 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114375995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsj03000
]
114375995
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114375995
04121 Ubiquitin system [BR:
gsj04121
]
114375995
Enzymes [BR:
gsj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114375995
Transcription factors [BR:
gsj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114375995
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114375995
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114375995
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114375995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
zf-UDP
Rtf2
Motif
Other DBs
NCBI-GeneID:
114375995
NCBI-ProteinID:
XP_028189687
LinkDB
All DBs
Position
11:50067817..50079379
Genome browser
AA seq
1002 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHILEMAEKDDTEGRCPACRSPY
DKEKIVGMAANCERLVAEVHMEKKVKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLN
LADEDFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCILNVH
GFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSHVQ
QITGAANNIQRQAGNVLPPPLDDCMDNSSGKPIVKNSSSTSVSIVRSSPPNGTSGRPIAL
SAVAWGTRATNCQPAADGLLCPNGLSRPKPDTISSSLPFSSAVACTIQASLNSDVTKRPL
LSDGSRSMTPQVKNELLKPVEQNRSMDILDSAGERTLVSDVSLSAVKLNNQLSSLPLAGD
SGRGSFTATNTTSSIDITRQPLSFGPEEAVISTCEEIENLSCEFSSVYIDRNAQNKHYSL
SIPSSSPDNVLVKSMQSQELQYNTDKLKDLMIKNADSKAAALYNEVCNLKEQCDLSLDSQ
SQVVSANTEVEDDVTTFDNQRLKDPEVIGSYLPESASFLHVSNHSSPLLLQCGDPCNVVN
AGFLDANDKVEDNSLLHAHNICNGYSDEISTSSYWFRHDASNEHHIGRLVSDAVNIGSDA
VMDKGESSIISNILSMEFDAWDDSLASHESLTKLLGDNTDSQNGPLKKSSSRKVQSNNQS
RFSFAWQEESKFQANVPPSSGATQPFPKNGSLIQDFVERDFSLNKLGFANGFPSNNLKES
GNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSVERMGQAFDSLSGNSLLD
PSFLLRNSYQTPSNGNIGGPGDVEFMDPAILAVSKGPEQFNYFENEARVQLLMQRSPSPQ
QDLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGRNGN
GLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDVFNRTFGI
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat
cagcagttgaaaccatgcaaatgtggttatcagatatgtgtctggtgttggcatcacata
ctggaaatggctgagaaggatgacacagagggacgatgccctgcatgtcgttctccatat
gataaggaaaagattgttgggatggctgcaaactgtgagagattggtggctgaagttcat
atggaaaaaaaggtgaagaaccagaaagcaaagtcaaaatcttctgaagcacggaagcag
ctcagtagtgtgcgagtaattcagcggaatctggtttacatagtgggattgcctctcaat
ctggcagacgaagatttcctccagcagcgagaatattttggtcagtatggaaaggtctta
aaagtgtcaatgtctcggactacagctggtgttgttcagcagtttccaaacaatacatgt
agtgtatatattacttactcgaaggaagaagaagcaattcgatgcattctaaatgtgcat
ggattcgttttggagggtagacctttaagggcttgttttggaaccactaaatattgtcat
gcatggctcagaaacatgccttgcagcaatccagattgtctatatcttcatgagattggc
tctcaagaggatagtttcacaaaagatgaaataatttcagcatacactagtcatgttcaa
caaattactggtgctgcaaacaatatacaacgacaagcagggaatgtattgcctcctcca
ttggatgattgcatggataattcatcaggaaaaccaattgtgaaaaattcatcaagtacc
tctgttagcattgtaagaagttcacctcctaatggaacttctgggagacctatagctctt
tctgcggttgcatggggtacacgggctacaaattgtcagccagctgctgatggtttatta
tgtccaaatggactgtccaggcctaaacctgatacaatcagcagcagcctacccttttcc
tctgctgttgcatgcacaattcaggcttcattaaatagtgatgtgacaaagaggccactg
ttgagtgatgggagtcgtagtatgacacctcaagtaaaaaatgaattattgaaacctgtt
gaacaaaatagaagcatggatatcctggatagtgctggtgaaagaactttggtttctgat
gtttctctttcagctgttaaattgaacaaccagttgtcttctctaccattagccggagat
agtggtagaggcagctttactgcaactaacacaactagttcaattgacatcactcgacaa
ccattaagctttggtcctgaggaagcagttatatctacctgtgaagagattgagaatttg
tcctgcgagttttcttctgtttacattgatagaaatgcccaaaataaacactacagccta
tccatacctagcagctcacctgataatgtgttggttaaatctatgcaatctcaagaattg
cagtataatactgacaaattgaaagatttaatgattaaaaatgcagacagtaaagctgct
gcattatataatgaggtttgtaatttaaaggaacagtgtgatttgtcattggattctcaa
tctcaagtagtatcagctaatactgaagtggaagatgatgtaacaacttttgataatcag
agacttaaggatccagaagttattggttcttatttgcccgagtcagccagtttccttcat
gtctcaaatcattctagtcctcttcttctgcagtgtggtgacccatgtaatgttgtaaat
gctggttttttagatgccaatgataaagttgaggataactcactattacatgcacataac
atatgcaatggatattctgatgagatcagtaccagttcttattggttccgccatgatgca
agcaatgagcaccacattggaagattagttagtgatgcagttaatattggaagtgatgct
gttatggacaagggtgagagtagtataatttcaaatatattatcgatggagtttgatgcc
tgggatgactcgctggcatcacatgagagtttgaccaagttgttgggtgacaacactgac
agccagaatggtccgttaaaaaaatctagttctaggaaagttcaaagtaacaatcaatca
agattttcttttgcatggcaggaggaatccaaattccaagccaatgtacctccatcttct
ggtgctacccagccatttccaaagaatggctcactcatccaggattttgtggaaagagac
ttttctttgaacaagctgggttttgcaaatggcttcccctccaataacctcaaggaatct
ggaaatcttggcagtggtcatttcattgcttcaaacaataagctttcagctgtttcaaga
gcacaaatttcagcaccgccaggattctctgttccgaacagggcaccacctcctggtttc
tcttcagttgagagaatggggcaggcttttgactccctctctgggaattcattgctggac
ccttctttcttactgagaaattcttatcaaacaccctcaaatggaaatattggtggtcca
ggtgacgttgaatttatggatcctgctattttggcagttagtaaaggccctgaacagttt
aactactttgaaaatgaggccagagttcaattattgatgcaaagatctccctcaccacag
caagaccttcgattttctgaaattgggaattccttttctcagtttggtgattcttatggc
atttcttcaaggttaaatcaatcacaagttagtaatctggcttcatttcctcagttatct
ctgcagcagtctagaaatgcagtcttgtcaaatggccaattggatgggcggaatggaaat
ggtctgggtgtggcagagcttttgagaaatgaaagacttggatttaacaagttttataga
ggatatgatgattcaaaatatcggatgcctaattctatggatgtgttcaacaggacattt
gggatttga
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