Glycine soja (wild soybean): 114376252
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Entry
114376252 CDS
T06057
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114376252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114376252
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114376252
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114376252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
114376252
NCBI-ProteinID:
XP_028190068
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All DBs
Position
11:complement(11162934..11170913)
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AA seq
660 aa
AA seq
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MSGLLNSSLNGSASNLPDGAGRSFASSFSGQSGAASPIFHHTGGIQGLHNIHGSFNVPNM
PGTLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSLGHSGVTNRGGI
SVVGNPGFSSSTNGVGGSIPGILPTSAAVGNRNAVPGLGVNPILGNAGPRITSSVGNMVG
GGNIGRTGGGLSVPGLSSRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNSYP
SGGPLSQSHVQAVSNLNSMGMLNDMNSNDSSPFDINDFPQLTTRPSSAGGPQGQLGSLRK
QGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVPMMQSQHFSM
GRSAGFSLGGTYSSHRAQQQQHAPSVSSGNVSFSSVNNQDILHLHGSDIFPSSHSTYHSQ
TSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQ
TAQPAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWTDESA
KGDPEFTVPQCYFAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAASELYNRGWFY
HKEHRLWLIRVPNMEPLVKTNTYERGSYHCFDPSIFETVRKDNFVLHYEMLEKRPHLPQL
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctgaatggatctgcttcaaatcttccagatggtgct
ggacggtcttttgcttcatcattttctggtcagtctggtgcagcctccccaatttttcat
cacactggaggtattcaaggattgcacaatattcatgggagctttaatgttcccaacatg
cccggtacactcacatcaagaaactcaactataaataatgtaccatcggggggtgttcaa
caacccactggaagcctttctagtggaagatttacatccaacaatctcccagttgcattg
tctcagctatctcatggaagttcccttggacattcaggagtcaccaatagaggaggtata
agtgttgtaggaaaccctggatttagtagtagcacaaatggagttggtggttctattcct
gggattcttcctacatctgctgcagttggtaaccgaaatgctgttccaggattgggagta
aacccaattttgggaaatgcaggtcctcgaatcacaagttctgtgggaaacatggttgga
ggagggaatattggaaggactggtggaggattgtctgtgcctggtctctcgtctcgtcta
aatttgggtgcaaacagtggatccggtggtttaggtatgcaaggacagaatcgattgatg
agtggtgtgcttccacaagggtctccgcaggtaatttcaatgctaggaaattcttatcct
agtgggggtccactttcccaaagccatgttcaagcagtgagtaacttgaactctatgggt
atgttgaatgatatgaattctaatgacagttcaccttttgacatcaatgacttccctcaa
ctgacaactcgtcctagttctgctggagggcctcaaggacagttgggttctttacgaaaa
cagggtcttggtgttagtcccattgttcaacaaaaccaagagtttagcattcaaaatgaa
gatttcccagctttaccaggattcaaaggtggtaatgcagattatgctatggatatgcac
cagaaagaacaacttcatgacaatactgtgccaatgatgcaatctcagcatttctctatg
ggaaggtcagctggtttcagcttagggggtacatattcatcacatcgagcacaacagcaa
cagcatgctccttcagtcagtagtggcaatgtctctttttcatctgttaacaaccaggat
attctccatctacatggatcagatattttcccatcttcacattcgacctatcattcacag
accagtggacctcctggcattggattaaggccgctaaattctccaaatacagtttctggt
atgggttcatatgaccagctcatccagcaatatcaacagcaccaaaatcagtcccagttc
cgccttcaaatgtcagctgtaaatcagtcttttagggatcagggcatgaagtctattcaa
actgcacaaccagcaccagatccatttggtttgcttggcctgttaagtgtgatcaggatg
agtgatcctgacctgacatctcttgctcttggaattgatcttactacactggggttaaat
ttgaattcatcagaaaatcttcacaagacctttgggtctccatggactgatgaatcagct
aagggagatccagagtttacagtgccacaatgttattttgccaaacagccacctgctcta
catcaaggttatttttccaagttttcggtggaaacattgttttacatattttatagcatg
cccaaagatgaagcccaattatatgccgccagtgagctttacaacagaggttggttttat
cacaaagaacatcgtttatggttaataagagttcccaacatggagccgctggttaaaaca
aacacatatgagagaggatcttatcactgtttcgatccaagcatatttgaaaccgtccgc
aaggataattttgttctacattatgaaatgttggaaaagagaccacatctgcctcaactt
tga
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