Glycine soja (wild soybean): 114376373
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Entry
114376373 CDS
T06057
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj04120
Ubiquitin mediated proteolysis
gsj04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114376373
04120 Ubiquitin mediated proteolysis
114376373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsj04121
]
114376373
Enzymes [BR:
gsj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114376373
Ubiquitin system [BR:
gsj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114376373
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
114376373
NCBI-ProteinID:
XP_028190270
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Position
11:795565..800559
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AA seq
554 aa
AA seq
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MKLKTYAGLSIIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLT
KKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQ
KRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMI
LATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGI
PLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTT
AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGQQGSQSDVHQRGTTGT
GSGSTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSMNSLVCSPGYTLHPPVQISMA
ESSNTDRNGEQTSSEEAQKQFLIAGRPPNLSFPPMQNFHFLPSQAHASPVNYGEGFENDP
NIPSSQLEAYRKLLQCQIQNLQILQNQLEMLQRIKADRNVDEGTPSSDSRGKSVVSSSSE
SGHGYREDIQDGKA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaagacatatgcgggtcttagtatcattgcaactctggctattatatatcat
gcatttaacagtaggggccagttttatccggcaatggtgtatctgtcaacttccaagatc
agtttggtgcttcttctcaacatgggtttggtctttatgtgtattctatggcaattaacc
aagaagttgttcttgggttccctccgagaggcggaggttgagaggcttaacgagcaatcg
tggagggaggtcatggaaatcctctttgcaataaccatttttaggcaggacttctcagtc
acattccttgcaatggtcacagcattgttgttgattaaggctttgcattggttggctcag
aagagagtcgagtacattgagaccactccctcggtgcccatgttgtcccatgttcgaatt
gtatcttttatgggcttccttcttcttcttgatagccttttcttgtacagttctatgaag
catttgatagaaacgtggcaggcttcggtttcactattcttttgtttcgagtacatgata
ctggcaactacaacggtgtcaatttttgtaaaatatcttttctatgtcagtgacatgctt
atggagggacaatgggaaaagaaaccggtcttcacattttacctggaactcattagggac
ttgcttcacttgtctatgtatatgtgcttctttcttgtaatttttgtaaactatggtatt
cccttgcaccttatacgggagctttatgagacatttaggaacttcaaagtccgtgttgca
gattacatacgttatcgtaaaatcacttcaaatatgaacgatcggtttccagatgcaacc
cctgaagagcttaatgcaagtgatgcaacctgcattatttgtcgtgaagagatgacgaca
gccaagaaacttatatgtggacatctttttcatgttcattgtctccgatcatggctggag
cggcagcacacttgccccacctgcagagccttggttgtaccacctgaaaatgggacaact
gcggctgcagggcagcaaggatcacagtcagatgtccatcaacggggaacaactgggaca
ggcagtggaagcacagctcagactgaggctactgatagtttgagtcgacatcaagctaga
ctccaagcagctgctgctgctgcttcaatatatgagaagtcttatgtgtatccctctatg
aattctcttgtatgctctcctggatacactcttcatcccccagttcaaatatctatggct
gaatcttctaatacggaccgtaatggagagcaaacttccagtgaagaagcacaaaagcag
tttcttatcgctggtagaccaccaaatctatcctttcctccaatgcaaaacttccatttt
ctaccttcccaagcacatgcatcccctgtgaactatggagaggggtttgaaaatgatcca
aatatcccaagctctcagcttgaagcttatagaaaacttcttcaatgccagattcagaac
ctacagattctgcaaaatcagctcgagatgctgcagaggataaaggctgatagaaatgta
gatgagggcacaccgtcatcagatagcagaggcaagagtgtcgtttcctcatcatctgaa
tctggtcatggttatcgtgaggatattcaagatggaaaagcataa
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