Glycine soja (wild soybean): 114377461
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Entry
114377461 CDS
T06057
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114377461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114377461
Spliceosome [BR:
gsj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114377461
Complex C
U5 SnRNP specific factors
114377461
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
114377461
NCBI-ProteinID:
XP_028191777
LinkDB
All DBs
Position
11:complement(52877244..52889307)
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AA seq
2358 aa
AA seq
DB search
MWNNGQILPPGTSVPPIPPPPAAQPSYTVLPPPPPPPVPMETEADAEARLEEKARKWQQL
NSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVY
KLLENMPMPWEQVRDVRVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLIN
GPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEP
LYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMFIK
AEDPDLPAFYYDPLIHPITSANKERREKRVYEDDDDDDWILPDGVEPLLKDTQLYTDTTA
AGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNEL
HHRPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLD
YNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQ
YTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLF
FLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPE
GIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRE
RIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLES
RKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALS
RIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNW
IKPADSEPPPLLVYKWCQGINNLQSIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRL
VLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRAS
EIAGPPQMPNEFITYWDTKVETKHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPD
PNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYS
KDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMK
VFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTR
IKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMS
HEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPR
INTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQAL
GGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWW
SPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLD
QELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASN
KYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNW
FPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIW
FVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAK
WKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLK
IEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDK
TIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITP
PSQQRQQIAEIEKQAHEANQVTAVTTKTTNVHGEELIVTTTSPYEQAAFGSKTDWRVRAI
SATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYMYGISPPDNPQ
VKEIRCIVMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAK
ILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEK
VQMLLSDRFLGFYMVPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFS
NMEEVEITAEGDREDTFS
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattctgccgcctggaacttccgttcctccgattcctccgcct
cccgctgcgcaaccctcctacacggtgcttccgccgccgcctccacctccggtgcctatg
gagaccgaggccgatgcggaggcgcgcctcgaggagaaggctagaaaatggcagcagctc
aattccaagcggtacagcgacaagaggaaattcgggtttgtcgagacgcagaaagaggac
atgcctcccgaacatgtcaggaaaatcatcagggatcatggtgacatgtcctcaaagaaa
tatcgtcatgacaaacgtgtttatcttggagcacttaaattcataccacatgcagtttac
aaacttctggaaaatatgcctatgccgtgggagcaggtccgagatgtgagggtcttgtac
catatttctggggctatcacatttgtcaatgaaataccatgggtcgttgagcctatttat
ctcgctcagtggggtaccatgtggatcatgatgagaagggagaaaagagatcgtcgtcat
tttaagaggatgcggtttcctccatttgatgatgaggagcctccactagactatgctgat
aatcttttagatgttgatcctctagagccaattcagctggagctagatgaagaggaagat
tctgctgtgtatacttggttctatgaccataaacctcttgtgaaaacaaagctcataaat
ggtcctagttaccggaaatggcatctttccctccctataatggcaactttgcatcggcta
gctgggcagctactttctgatttaattgaccgcaattatttctacttgtttgacatggag
tcattttttacagcaaaggctttgaacatgtgcatacccggtggacctaaatttgagcct
ctctaccgtgatatggaaaagggagatgaggactggaatgagtttaatgacatcaataaa
ctcattataaggtcaccacttcgcacagagtatagaattgcttttcctcacctttataac
aacaggcctcgcaaagtaaagctttgcgtgtatcatactcccatgatcatgttcataaaa
gctgaagatcctgatctacccgcattttattatgatcccttgatacatccaataaccagt
gctaacaaggagcgccgtgagaagagagtttatgaggatgatgatgatgatgattggata
ttgccagatggtgtggagcctttgcttaaagatacacaactttatacagacacgacagct
gctggtatctctttgctgtttgctcctcgtccttttaatatgagatctggtcgcatgagg
cgggcagaggatattcctcttgtgtcagagtggtataaagagcattgtcctccatcatat
ccagttaaagttcgggttagttatcaaaagttgctgaaatgttttgtgttgaacgagctg
catcatagacctcctaaggctcaaaaaaagaagcacttattccgatctctccaagcaact
aagtttttccaaaccactgaacttgattgggttgaggcaggtcttcaagtttgtaggcag
gggtataacatgctgaatctgctgatacacaggaaaaatttgaactaccttcaccttgat
tataattttaatctaaagcctgtgaaaaccttgactacaaaagagcggaagaaatcacga
tttggtaatgctttccatctctgtcgtgagatcctccgattgacgaaactcgtggttgat
gccaatgttcagttccgtttggggaatgttgatgcttttcagcttgcagatggtctgcag
tatactttttcacatgttggacagttgactggtatgtataggtacaagtataggcttatg
cggcaaataaggatgtgcaaggatttgaagcacttgatttactaccgctttaacactggg
cctgttgggaagggacctgggtgtgggttttgggcaccaatgtggagggtttggttattc
ttccttcgtggtattgtgccccttcttgaacgatggctgggcaatttacttgcacggcag
tttgaggggcgccattcaaaaggagtggccaagactgtaactaaacagcgtgttgagagc
cactttgacttggagcttcgggcagcagttatgcatgacgtgcttgatgccatgccagag
ggtataaagcaaaataaggcaaggactatattgcaacatttgagtgaggcttggcgatgc
tggaaagcaaatattccttggaaggttcctggcctgcctgttcccattgagaacatgatt
cttcgatatgtgaaatcaaaagcagactggtggacaaatgttgctcattataatcgtgag
cgtataagaagaggtgcaactgtggataagactgtttgtcgtaagaatcttggaagattg
acacgactctggctgaaggcagaacaggaacgtcaacacaattatttgaaagatggtccg
tatgttactcctgaagaagctgttgctatctatacaacaactgtacattggttggaatct
aggaagttctcccctattccctttccacctttatcatataagcatgataccaagctgctt
atccttgcacttgagaggttgaaagaatcctatagtgttgcagtgagattaaatcaactg
caaagagaagagttggggctgattgagcaagcttatgacaatccacatgaggcattatcg
cgaatcaagcggcacttgctcacccagcgtgcattcaaagaagttgggatagagtttatg
gatttatatagctacttgattccagtttacgagatagagcctcttgagaaaattacagat
gcatatcttgatcaatacctgtggtatgaaggtgacaagcgtcatctctttcccaactgg
atcaagccagcagattcagagcctcctccccttttagtttacaaatggtgtcaaggtata
aacaatttgcaaagtatatgggacaccagtgagggtcagtgtgttgtgatgctgcaaact
aagtttgagaaattctttgagaagattgatttaacaatgcttaacaggcttctgcgactg
gttctagaccataatattgctgattatgtcactgcaaagaacaatgtggtgttgtcatac
aaggatatgagccatacaaattcatatggtcttatacgtggcctgcagtttgcttccttt
gttgttcagtattatgggctggtattagatcttttacttcttggactgactcgagccagt
gagattgctggtccaccacagatgccaaacgaattcattacttattgggatacaaaagtt
gagactaagcatccaatcaggctttattctcggtacattgatcgggtccatatattattt
cgtttcacccatgaggaggctcgggatctcattcagcggtatctgaccgagcaccctgat
cctaacaatgagaacatggtggggtacaataataagaagtgttggccaagagatgctaga
atgaggcttatgaaacatgatgtcaatcttggaaggagtgtcttctgggatatgaagaat
cgccttcctcgaagcatcacaacattggagtgggagaacagttttgtttctgtttacagc
aaggataatccaaacttgctttttagcatgtgtggatttgaagtgaggatacttcctaaa
attagaatgactcaagaagcattcagtaacacaagagatggtgtctggaatctccagaat
gaacagacgaaagaaaggacagctgttgctttcttacgagttgatgatgaacacatgaaa
gtgttcgagaatcgtgtgaggcagattcttatgtcttccggttctactacattcacaaaa
attgtcaataagtggaacacagctttaataggactcatgacttatttccgggaggcaact
gtgcatactcaagagctgttggatttgctagtcaaatgtgaaaataaaattcagactcgt
attaagattggactcaactcaaagatgcctagcaggtttccacctgtcattttctacacc
cctaaagaaattggagggcttggaatgttgtccatgggccacattttgattccacaaagt
gatcttcgatacagccagcagacagatgttggagtaacccacttcaggagtgggatgagt
catgaggaggaccaactgattcccaacctttatcgttatatacagccttgggagagcgaa
ttcattgattcacagcgtgtctgggctgaatatgctttgaagaggcaggaagcacaggct
caaaacagacgtttgacccttgaagatctggaagattcatgggatagaggtataccacgt
ataaacactttgtttcaaaaggatagacacactttggcttatgataaaggatggagggtg
cgtactgatttcaagcagtatcaagttctcaaacaaaatcccttctggtggacacatcag
aggcatgatgggaaattgtggaacttgaacaattaccgtactgatgttattcaagccctt
ggaggagttgaaggaattcttgaacatactttattcaaaggaacatattttccaacttgg
gagggtcttttctgggaaaaggcatctggctttgaggaatctatgaagtataagaagctc
accaatgctcagagatctggtctaaaccagatacccaaccgaagatttacactatggtgg
tccccaaccattaaccgagccaatgtttatgtgggtttccaagtgcagctagatctgact
ggtattttcatgcatggaaaaataccaactttgaagatatcccttattcagatattcaga
gctcacttgtggcaaaagatccatgagagtgttgttatggatctctgtcaggttttggat
caagagttggatgctttggagattgaaactgttcagaaggaaacaatccatccaaggaaa
agctacaaaatgaacagttcttgtgcagacattcttctctttgctgcccatagatggcca
atgtcaaagcctagtcttgtagctgaatctaaggatgtttttgatcagaaggcaagcaat
aagtactggattgatgttcagctacgatggggtgattatgactctcatgatattgagcgt
tatactcgggccaaatttatggactacacaacagataacatgtctatatacccatctcct
actggggtgatgattggtcttgatttggcatataatttgcattctgcgtttgggaactgg
ttcccagggtcaaaaccactacttcagcaggccatgaataagatcatgaagtcaaatcct
gcactgtatgtgttgagggaacggataaggaaaggtttgcagttgtactcttctgagccc
actgaaccatatttgtcttcccaaaactatggagagatattcagcaaccaaataatatgg
tttgttgatgacactaatgtgtatcgtgttacaattcataagactttcgaaggaaatctt
acaacgaagcccatcaatggtgctatatttattttcaatccaaggactgggcagttgttt
ctcaaggttattcataccagtgtgtgggctggtcagaagcgtcttgggcagttggcgaag
tggaaaacagcagaagaagttgctgctcttgtaaggtctttgcctgttgaagaacagcca
aagcaaattattgtcactcgtaaaggaatgttggatccattggaggttcacctgctggat
ttccccaacattgttattaaaggaagtgaactgcaacttcctttccaggcatgtttgaaa
attgagaaatttggggatcttatattgaaggccacagaaccgcaaatggttttgttcaat
atctatgatgactggctgaagagtatttcttcatacactgcattctccaggctgattctg
attctgcgtgcactccatgtgaataatgaaaaggcaaaaatgttgctgaagcctgataaa
actatcatcactgaacctcatcacatctggccttctctaagtgatgatcaatggatgaag
gtggaggttgcattaagagatcttatactatcagattatgcaaagaaaaacaatgtgaat
acttcagctttgactcagtctgagatccgtgatattatacttggagctgagattactcca
ccttctcaacagcggcaacagattgcagagattgagaaacaggcccatgaagcaaatcag
gtgacagctgtgacaacaaagactacaaatgttcacggtgaagaacttatagtaaccacc
actagtccttatgagcaagctgcttttggttctaagactgactggcgtgtcagagcaata
tcagccacaaatttataccttcgcgtgaaccatatatatgtgaactctgaggatataaag
gaaacgggatacacctatattatgccaaagaacattttgaaaaagtttatatgcatagca
gatcttcgaacgcaaatttctgggtacatgtatggcataagtcctccagataatcctcag
gttaaagaaattcgctgcattgtgatgccaccccaatgggggacacatcaacaagttcat
ctgccatcagctcttccagagcatgatttcttgaatgatttggagcctttaggatggatg
catactcaaccaaatgaacttcctcagttgtcgcctcaggatctcacttcacatgccaag
atcctagagaacaataagcaatgggatggggagaagtgtattatcttgacttgcagcttt
actcctggttcttgttctttaactgcatataagctcactccatctggttatgaatggggg
cgtgttaataaggatacgggaagcaatccacatggttaccttcccacccattatgagaag
gttcagatgctccttagtgatcgcttccttggtttctacatggttcctgataatggtcca
tggaattacaacttcatgggggtgagacacgcatcagggatgaaatatggagtgaagctt
gggactcctagggaatattaccacgaggaccatagaccaacccatttcttagagttcagc
aatatggaggaagtggagataactgctgagggagatcgagaggatacattctcttga
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integrated database retrieval system
