Glycine soja (wild soybean): 114379083
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Entry
114379083 CDS
T06057
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114379083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114379083
03009 Ribosome biogenesis [BR:
gsj03009
]
114379083
04131 Membrane trafficking [BR:
gsj04131
]
114379083
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gsj04147
]
114379083
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
114379083
Ribosome biogenesis [BR:
gsj03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
114379083
Membrane trafficking [BR:
gsj04131
]
SNARE
SNARE associated proteins
Others
114379083
Autophagy
Aggrephagy
Other aggrephagy associated proteins
114379083
Exosome [BR:
gsj04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
114379083
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
CDC48_2
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
nSTAND_NTPase5
Parvo_NS1
ABC_tran
Viral_helicase1
NB-ARC
AAA_lid_PRS2_C
AAA_7
NACHT
Vps4_C
TsaE
IstB_IS21
DUF815
Zeta_toxin
AAA_24
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
114379083
NCBI-ProteinID:
XP_028193445
LinkDB
All DBs
Position
12:complement(38014384..38020150)
Genome browser
AA seq
807 aa
AA seq
DB search
MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGD
TILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV
VAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVAKNVDLRTLARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSKEN
PEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP
ESGDRTTTGSDPFATSAGGADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcaaggcgaatcatcggacccgaaatcggggaagaaggacttctcgaccgcg
attctggaacgcaaaaagtcgccgaaccggcttgttgtggatgaggctgtcaacgacgac
aactccgtagtgaccatgcacccccaaaccatggaaaagcttcagcttttccgaggggac
actatccttatcaagggtaagaaacgaaaggatactatttgcatagctcttgctgatgag
aactgtgaggagccaaagatcaggatgaacaaagttgtgaggtcgaatttgcgggttcgg
cttggagatgttgtgtctgtgcaccagtgcccggatgttaagtatgggaaacgtgtgcac
attcttcctattgatgataccattgaaggtgtcactggcaatctgtttgatgctttcttg
aaaccctatttcttggaggcttatcgtcctgtcagaaaaggagatctatttcttgtccgg
ggagggatgagaagtgtagagttcaaggtcattgagaccgatcctggggagtattgtgtt
gttgctccagacactgaaattttctgtgagggggagcctttgaaaagagaggatgaagaa
agactggacgaagttgggtatgatgatgtgggtggtgtcaggaaacaaatggctcagatt
cgtgagttggttgagcttccattgaggcatccacagctttttaaatcaattggtgtgaag
cctcccaaaggaattttactttatggacccccaggttctgggaagacattaatagcaaga
gctgtagctaacgaaactggagcttttttcttttgtattaatggaccagagattatgtcc
aaacttgctggagagagtgaaagcaatctcaggaaagcgtttgaagaagctgaaaagaat
gcaccgtccattatctttattgatgaaattgattccattgcccccaagcgggagaagaca
catggtgaagttgaaaggaggattgtttcacaacttttgactctgatggatggattaaaa
tctcgtgctcatgttattgttattggagctactaatcgtccaaatagcattgacccagca
ttgagaaggtttggtagatttgatagggagattgatattggtgttcctgatgaagttggg
cgacttgaagtccttcgcatacatactaaaaacatgaagctatctgatgatgttgattta
gagagaattgcaaaagatactcacgggtatgttggtgctgaccttgctgccctttgcact
gaagctgctttgcaatgcattagggagaagatggatgtaattgacttggaggatgagaca
attgatgcagaagtactgaattccatggcagttacaaatgagcatttccagactgccctt
ggaacaagcaacccatcagctttacgtgaaactgttgttgaagtgcctaatgtcagctgg
gatgacattggaggcctcgaaaatgtcaagcgtgaactgcaagagactgtacaatatcca
gttgagcacccagaaaagtttgagaagtttggtatgtctccatcaaaaggagtactcttc
tatggtcctccgggatgtgggaaaactttgttagccaaagctattgctaatgaatgtcaa
gctaacttcatcagtgtgaaaggtccagaactgcttacaatgtggtttggtgaaagtgaa
gctaatgttagagaaatttttgacaaggccagacaatcggctccatgtgtcctcttcttt
gatgagcttgactctattgccactcagagaggaagcagtgttggggatgctggtggtgct
gctgatagagttctaaatcaacttctgactgaaatggatggcatgtctgccaaaaagact
gtgttcataattggggcaactaacagacctgacattattgacccagcacttcttcggcca
ggccgtctggatcaattgatctatattcctctccctgatgaggattcccgtcatcaaatc
tttaaagcctgcttgaggaagtcacctgtcgcaaaaaatgttgatttgagaacattggct
aggcatactcaagggttcagtggtgctgatattacagaaatatgccagcgagcatgcaaa
tatgcaataagagaaaacatagagaaggacattgagcgagagaggaagagtaaggaaaac
cctgaggccatggatgaagacacagttgatgacgaagttgccgagatcaaggctgctcat
tttgaggagtcaatgaagtttgcacgtaggagtgttagtgatgctgatatacgcaaatat
caggcatttgctcagaccttacagcaatcaagagggtttggaagtgaatttaggtttcca
gagtctggagacaggactactactggatctgacccctttgcaacttctgctggtggggct
gatgaagatgatctgtatagttag
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