Glycine soja (wild soybean): 114379619
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Entry
114379619 CDS
T06057
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114379619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114379619
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114379619
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
114379619
NCBI-ProteinID:
XP_028194107
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All DBs
Position
12:1783245..1805743
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AA seq
1966 aa
AA seq
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MADTSSVDASLWWDSFTVLFSELENSSLTSDLPPNLAKKLKDNHAWFVDTLTRFKPPNQS
SKEALSSKTLKIGSHQLTIQPQLKDTALQISSCLLLDEVQSYILVERSIKHNNAAVADSM
APEFLYMMLVQYYKERQCLLKCIRWILMHAIHNGYVAEDNTMKEEARKLFHDGLENKLIL
FFSNLLSCSFPEQMDVDLFTLWAEETLIEDNLVLDILFLAYYDSFCTCSSEMWKKFISLY
KGILAGDYNLGKLSITTETQQLSYHAKVQLLLILIETLNLENVLQMVHDEVPYRKGVSTF
SMTDVQEMDALVSTFNAFEMKEAGPLVLAWAVFLYLLLTLVEKDENNELMEIDHISYVRQ
AFEAGSLRYCLEILECDILKEYDGPVSGYRGVLRTFISAFVASYEINLQPEDSNPTLMLD
ILCKIYRGEESLCIQFWDKESFIDGPIRSLLCNLESEFPFRTLELVQLLSSLCEGTWPAE
CVYNFLNRSVGISSLFEISSDLEVVEAQQAVQVPGVEGFFIPAGTRGSVLRVVGENTALV
RWEYSPSGMFVLLLHLAQEMYLNSKDGVVYTLDLLSRLVSFNTGVCFAVMDISNSLLFHD
VGLMDEQVEKRVWVVDIICNLVKNLTLNSCGAALMSMGVKILGIMLICSPANVAATTLNA
NLFDITLQTPTFNVGSNGLSSGSWLLSCKLARMLLIDCEQNSNDCPLAISVLDFTIQLVE
TGVEHDALLALIIFSLQYVLVNHEYWKYKMKHIRWKITLKVLELMKKCISSMPYYGKLGE
IINNVLFSDSSIHNTLFQIVCTNAHALEKLHVSRLFDPMEIEGLQLAIGSVLDILSVMLT
KLSKDTSSNFPVFLQALFSCTTKPVPVVTSVMSLISYSQDPAIQFGAVRFISMLFAIADC
IQPFSYGITCFIPDNEIMDLRHSVNYILLEQSESNEDLFVATVNLFTSAAHYQPSFIIAI
FALEENTEDHLSIGDAKLQKKETSPTTVVSKRSSLVDALMHYIERADDLIKSNPRILLCV
LNFMIALWQGAPHYANLLDALRRHGKFWEHLANAISNIASSEIPLLRSLEEKDAFNLAYC
FHCQSSIHGIMAYELFFHKKLFHAESLVKDAAESKDKEQNATKTEKSKAPDLQDLKGIWS
SWFNDSILEKLIKSYTSCGYNNDIYGGAKVATSLFSVHVMMKLAVCDSGSISVLLLQKIH
EILTKLSIHPAFSELVSQYSQRGYSEGKELKKLILSDLYYHLQGELEGRKIDIGPFKELS
QYLVESNFLGTYQHLFNEDSFTKNMFTKNVYLFDLAHLREDLRLDLWDCSNWKTSKEIAE
TMLRFLQDANSVMLLSSSKLSALKGLIAVLAVNHYDSQGRATTGGRISDELIFAFMDNIC
QSFLATIETLSSVLDASEDILNFLACQAELLLQLTRTVCKSLSLHVSLLVLKCASSGLKL
LSALKPLPSEANLIMKLLLTLLLSVLQSDSLNAHSDGATDESSGEDFSKVSNATLGLLPI
LCNCIATSEHCMLSLSVMDLILRRFLTPRTWLPVLQNHLQLPIVMLKLHDKNSASIPIIM
KFFLTLARVRGGAEMLYCSGFLSSLRVLFAESGEDFLRIGSENLGSSCEKFVIPQDIWGL
GLAVVTAMVKSLGDNSSGTAIVDSMIPYFFSEKARLIFNSLNAPDFPSDDHDKKRPRAQR
AWISLATLKETEHTLMLMCELAKHWNSWIKAIRNVDRQLREKCIHLLAFISRGSQRLSEL
SSRNAPLLCPPTVKEEFEICLKPSYVNSKNGWFALSPLGCVPKPKISSFSTALSTYGQAT
ESRNPASKTGFSDTVALQVYRIAFLLLKFLCLQTEGAAKRAEEVGFVDLAHFPELPMPEI
LHGLQDQAIAITTELCEANKLKVSPETQDVCNLLLQILEMALHLELCVLQICGIRPVLGR
VEDFSKEAKSLFSALEGHAFLKASCNSLKQMISCVYPGLLQGENFI
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atggctgataccagttccgtggatgcgtctctgtggtgggactcattcactgtcctcttc
tctgagcttgaaaattcctctctgacctcagatctcccaccgaatttggcgaagaagttg
aaagacaaccatgcctggttcgtggacacactgacgcgcttcaaaccgcccaatcagagt
tcaaaggaagctttgagttcaaaaacgctgaaaattggatctcaccaactcactattcaa
cctcagctgaaagatacagcgttgcagattagctcctgtctgctactagacgaggttcaa
tcatacattcttgtcgaaaggtccatcaaacacaacaatgctgctgtggctgattccatg
gctccagagtttctttacatgatgttagttcaatattacaaggagcgacagtgcttgcta
aagtgcatcaggtggattctcatgcatgctatacacaatggttatgtggctgaagacaat
actatgaaggaggaggcaagaaaactgtttcatgatggactggaaaataaattaatattg
ttctttagcaatcttttgtcatgtagtttcccagagcaaatggatgttgatctttttact
ctgtgggctgaggagactctaattgaagacaacttggttttagatatccttttcctagca
tattatgattcgttttgtacctgtagcagtgaaatgtggaagaagtttatttctctttac
aaggggatcttagctggtgattataatttgggaaagctatcaattacaacagaaacacaa
cagttgtcttatcatgctaaagttcagctgctgcttattttaatagaaaccctgaacctg
gagaatgttcttcaaatggttcatgatgaagtaccttacaggaaaggcgtgtctacattt
tccatgactgatgttcaagaaatggatgcactagtttctacattcaatgcttttgaaatg
aaagaagctggtcctctagttctagcatgggcagtatttctttatctactcttgacactt
gtggaaaaagatgaaaataatgagctaatggagattgatcacattagttatgttcgtcaa
gcctttgaggctggatccttgcgttattgtcttgaaattcttgaatgtgacattttgaag
gaatatgatggcccagtgtctggatatcgcggtgttttgaggacatttatatctgcattt
gttgcatcttatgaaatcaaccttcagcctgaggacagtaaccccactttgatgctggat
attctttgcaagatttaccgtggagaggaatcattgtgtattcagttttgggacaaggaa
agttttattgacggtccaattcggtctcttctttgcaacctagagagtgagtttcctttc
aggacactcgaacttgtacaactcctgtcatccctttgtgaaggaacttggcctgcagag
tgtgtgtataactttctaaataggtctgttggtatatcatccttgtttgagattagtagt
gatttggaggtagttgaggcacaacaggcagtgcaagttcctggggttgaaggtttcttt
attccagctggaactcgtggtagtgtcttgagagttgttggagagaacactgcccttgta
cgatgggagtattcaccatctggaatgtttgtgttactcctacatttggcccaagagatg
tatttgaatagcaaggatggagttgtttatactcttgacctgcttagtagattggtgtct
tttaacactggtgtttgctttgctgtgatggacatcagcaactctctgctatttcatgat
gttggtttgatggatgagcaggttgaaaagagggtctgggtagttgacataatatgcaat
cttgtaaaaaacctgactctgaattcctgcggtgctgcacttatgtcaatgggtgtcaag
attttggggattatgttgatttgttctccagctaatgttgcagcaaccactctaaatgca
aatctttttgatattactttgcagacacctacgttcaacgtaggcagtaatggtttgtca
agtgggtcatggttgctttcttgcaaactggctaggatgcttttaattgactgtgagcaa
aacagtaatgactgccccttggcaatatcagtgctggacttcaccatacagcttgtagaa
acaggagtagagcatgatgctctcctggcattgatcattttctctttgcagtatgtccta
gtcaatcacgagtattggaaatacaagatgaaacatattagatggaaaataacattgaag
gttcttgagttgatgaaaaaatgcatttcatcaatgccttattatggaaaattgggtgag
atcataaacaacgtgttgttctctgattcttccatccataacacactattccaaattgtt
tgcactaatgcacatgctttggagaaattgcatgtaagccgcctctttgatccaatggaa
attgaagggttacagcttgctataggttctgttttagatattctttcagtcatgttgacc
aaactttctaaggatacatcatcgaactttccagtttttctccaagcattgttctcatgc
acaaccaaaccggttcctgttgtcacttctgttatgtccctgatttcatactctcaagat
cctgccatccaattcggtgctgttaggtttatttcaatgttatttgccatagcagattgt
attcaaccattttcatatggaatcacatgcttcattccagataatgagatcatggatttg
aggcactctgtgaactacatactgcttgagcaatcagaatcaaatgaagatctctttgtt
gctacagtcaatctgtttacttctgctgcacattaccagccttctttcattattgctatc
tttgctctagaggagaacactgaagaccacttgagcattggtgatgcaaagctgcaaaaa
aaggaaacttctcctacaactgtagtttctaaaagatcaagtcttgtagatgcacttatg
cactatattgaaagggcagatgatctgatcaagagcaatccccgcatactgctttgtgta
cttaacttcatgattgccttatggcaaggggctccccattatgccaatctcttggatgct
ttaagaaggcatggaaagttttgggaacacttggccaatgcaatctctaacattgctagc
agtgaaattcccttacttaggagtcttgaagaaaaagatgctttcaatctggcttactgt
ttccattgtcaatcttccatacatggaatcatggcttatgaattattctttcacaagaag
ttgtttcatgcagagtcacttgtgaaggatgcagctgaatccaaggacaaggagcaaaat
gccacaaaaacagaaaaatccaaagcaccagatcttcaggatcttaagggaatctggtct
tcatggttcaacgactctattttagagaaactaataaagtcatacacttcttgtggatat
aataatgatatatatggtggtgcaaaggtcgccaccagtttattctctgttcatgtgatg
atgaaattagcagtttgtgactctggaagtatatctgtgttattgcttcagaagattcat
gaaattctgacgaagctcagcattcatcctgctttctctgaattggtgtctcagtattca
caacgtggttacagtgaagggaaggaactaaagaaattgatactcagtgacctctattat
catttgcaaggagaacttgaagggaggaaaattgatattggcccattcaaagaattatct
cagtatcttgtcgaatcaaattttttgggaacgtatcaacacctgttcaatgaagactct
tttacaaagaacatgtttacaaagaatgtgtacttgtttgaccttgcacacttgcgagaa
gatttgagattagatttgtgggattgttctaattggaaaacatccaaggagattgcagaa
accatgctgcgtttcctgcaggatgcaaactcagttatgttgctttcaagttcaaagctt
tctgctttgaaaggactgatagctgttttggctgtcaaccattatgattcacaagggagg
gctacaactggagggagaatttcagatgaactcatattcgctttcatggataatatatgc
caatctttccttgctaccatagagacattatcatctgttctagacgcctctgaggatatt
cttaactttcttgcatgtcaagcagaattactcctccagttgacaagaactgtctgtaaa
agcctctccttacatgtatccctacttgttctgaaatgtgctagttcaggtcttaaacta
ttgagtgcacttaagcctttaccttctgaggctaatctgatcatgaaacttttactcaca
ttgctgctttcagtactacagtccgactcccttaatgcacattcagatggggcaactgat
gagagttctggtgaggacttctcaaaggtttcaaatgcaaccctgggactactacccatt
ctttgcaactgcattgcaacttctgagcattgcatgctatccctatcagttatggacttg
atattgagacgcttcttgacacccaggacttggttacctgtcctgcagaatcatctccaa
ctgccaattgttatgctgaaactccatgataaaaattctgcctctattccaataataatg
aagttctttttgacccttgcacgggttagaggaggtgctgagatgctttattgttctggc
ttcttgtcatctttaagagtgctatttgctgaatccggtgaggatttcttgagaattggt
agtgagaatctgggcagctcatgtgagaagtttgtaataccgcaggatatttggggtctt
ggattagctgtggttactgctatggttaaatccttgggagacaattcttctggcaccgct
attgtggacagcatgataccgtactttttttcagagaaagctcgtcttatttttaattct
ctaaatgccccagactttccttctgatgatcatgacaagaaaagacctcgggcacagagg
gcatggatttctttagctactcttaaagaaactgaacatactttgatgctcatgtgtgag
ctagcaaaacattggaattcatggattaaggcaataagaaatgtggatagacagcttaga
gagaagtgtatccatcttttagccttcattagcaggggatctcaacgccttagtgaattg
tcaagcagaaatgcccctcttttatgtccacctactgtgaaagaggaatttgaaatttgc
ttaaaaccttcttatgtcaatagcaaaaatggatggtttgctctttcaccactcggatgt
gtgccaaaaccgaagatctcttctttctcaactgcattatctacctatggtcaagcaact
gagagtaggaatcctgcttcaaaaacaggcttttctgatactgttgccttgcaggtatat
agaatagcatttctccttttaaagtttctttgtttacaaactgagggtgctgctaaaagg
gctgaggaagttgggtttgttgatcttgcacattttcctgagcttccaatgccagaaatc
ttgcatggactgcaggatcaagctattgccattactacggagctctgtgaagccaacaaa
ctaaaggtctccccagaaacacaggatgtttgcaacttattgttgcaaatacttgaaatg
gccttgcacttggaactttgtgttctacaaatttgtggcataagacctgtattaggacgt
gtggaggatttttcaaaggaagccaaatctttatttagtgcattggagggtcatgctttt
ctaaaagcatcttgcaactctctaaaacagatgatatcgtgtgtctatcccggattgctg
cagggagagaatttcatataa
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