KEGG   Glycine soja (wild soybean): 114379853
Entry
114379853         CDS       T06057                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03030  DNA replication
gsj03410  Base excision repair
gsj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114379853
   03410 Base excision repair
    114379853
   03420 Nucleotide excision repair
    114379853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gsj03032]
    114379853
   03400 DNA repair and recombination proteins [BR:gsj03400]
    114379853
Enzymes [BR:gsj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     114379853
DNA replication proteins [BR:gsj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    114379853
DNA repair and recombination proteins [BR:gsj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      114379853
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 114379853
NCBI-ProteinID: XP_028194437
LinkDB
Position
12:7062233..7085327
AA seq 2209 aa
MSGDGRRRDRRDNRASKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTFASSSVDDED
SYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEII
EKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDAAEAFLSVSTER
REHRPQDFLDCITDVREYDVPYHVRFAIDNDIRCGQWYDVGVSSNNGVTLEKKTDLLQRA
EVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPE
FEGCFKVTNAQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDEL
GFKCDMNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVR
FAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAY
QQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDV
AAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALK
TQIESEFVDDSEKNNKALTHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKP
VTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDM
VVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPL
ELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIR
KTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGE
LKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESST
MSKSLADYGQQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAI
FETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPR
VVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKRHDDSTRVPLVMDGDIVNELEDF
GNKDRSSTCRPRPIIRHYEANNEQHSRKVYDQEDVEQQHNKPLQQNVYRSVDYQGWLQIK
KQTWKDILERRKKQRLENSKKSDRVSSVLEQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQ
IIQLVPSSLIGQFFAWVVVDGSMHKIHVSVPRVFYLNSRSAITEGFMGKRVNKTLPHGRH
SYNLYEVSINEIQYGEASQKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANK
RSLQEPWNLSELHMKTTAECAYLEQSISFFYFYHSISEGRAIYIGYFPASKTMTVVVVNP
YQNKDLSPVFLERHFHDACQSLSIEPPPRNGINFKVDYVAHVKDAEAVMQRAINGHSHGR
ENHMPMVAVIECPNVQLVKLGIRALDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCA
ASVQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGI
NSEQNCFVDEVQQPALTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLRFGHEL
DSGAFSTNDQNGFDESTSCVQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPK
SKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSRAKAYCDS
LLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPTKSDEAVNNESQVDIISSWNIAE
YLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEITEF
TKEQIGSYFTHKLLGIVHDIGLHMKGMNRLENNQSTSGLPPLTGDVHRGDASLEFIKHVC
AVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFILSNVICSYCNDCRDLDL
CRDSALLTEEWRCAVPQCAQPYDREVMENALLQTVRQRERLYHLQDLVCTRCHQVKAAHL
AEQCACAGSFRCKEDASEFREKMQIFLNIASRQKFQLLQECTSWILELR
NT seq 6630 nt   +upstreamnt  +downstreamnt
atgagcggcgatggccggagacgtgaccggagagacaacagagcatccaagaagcggaag
ctgaaccgcactcccgaggaagagctcgaggcgaaattagggttcgatctcttctcagaa
ggtgaaaagcgtctaggatggttactcacttttgcatcctcttctgttgacgatgaagac
agttacaaagtgtacagttgcgttgatctttactttgttgcacaggatggctcttcattc
aagacaaaattcagatttcggccctatttctatgtagctacaaaggataaaatggagatt
gatgttgaagcatacctgaaaagacgttatgaaggtcagattgcagatgttgaaattata
gaaaaagaagacctggatcttaaaaaccatttatctgggttaagaaaatcttatttaaag
ctttcatttgatactgtgcaacaattgatggatgtgaagagagacctgatgcctactgtt
gaaagaaataaggccaagtctgatgctgcagaagcttttttgtccgtgtcaacagaaaga
agagaacatagacctcaagattttctagattgcataaccgatgttcgtgaatatgatgtt
ccttatcatgttcgctttgctattgacaacgatatacggtgtggccagtggtatgatgtt
ggagtgtccagtaataatggggttacacttgagaagaagacagatcttctgcagcgtgct
gaagttcgtatttgcgcatttgacattgagaccacaaaacttccattaaaatttcctgat
gctgattatgatttaattatgatgatttcatacatggtagatggtcaagggtatttaatc
ataaatagagagtgtgttggggatgatatagaggatatagagtacactccaaaaccagag
tttgaagggtgttttaaggtgacaaatgctcaaaatgagattgagcttcttagattatgg
ttttctcatatgcaagaggtgaaacctggtatctatgtgacgtataacggtgatttcttt
gattggccattcctggaacgaagggcaacccatcatgggttcaaaatgagtgatgaattg
gggttcaaatgcgatatgaatcaaggggaatgtcgtgctagatatgcttgccatttagat
tgttttgcttgggttaaacgtgatagttatctccctcaggggagccaaggcctgaaggca
gttacaaaagcaaagttgggatatgatccattggaggtgaatcctgaggacatggttcgc
tttgcaaaggaaaagccacagatgatggcctcctattctgtttctgatgcagtggcaact
tattacttatatacaacttatgttcatccctttattttctctcttgcaaccattataccc
atgtcaccagatgaggttttgcgcaaaggtagtggaaccctgtgtgaaatgttgcttatg
gtgcaggcatacaaggctaatgttatatgtcctaacaaacatcaatctgacccagagaag
ttttataataatcatcttcttgagagtgagacgtacattggtggtcatgtggaatgtctt
gaaagtggtgtattcagatctgatattccatctagttttacacttgagccatctgcctat
cagcaacttatcaacaaccttgatcgagatctacagtatgccataacagtggagggtaag
atggatttggaatttgtttctaattatgatgaagtaaagaatgcaatcatggaaaagctt
gtaaaattacgagatgcaccaatacgtgaagaatgtcccctcatttatcatctggatgta
gctgccatgtatccaaacataattttaacaaaccgacttcagccaccgtcaattgttacg
gaggaagtttgcactgcatgtgattttaatcgtcccggaaagacttgcctacgcaaactt
gagtgggtttggcgtggagaaacattcatggctaagaaaagtgactattatgctttaaag
acacaaattgaatcagagtttgttgatgattctgagaagaacaacaaagccttgacccac
tattctgagaagtcatcaaaatcttttcttgaccttcccaaggcagagcaacaatcaaga
ctgaaagagcgtttaaagaaatactgccagaaggcatataagcgggtacttgacaaacct
gttactgaacttcgagaagcaggaatctgcatgcgtgaaaatccattttatgttgatact
gttcgcagtttccgggatagaagatatgaatataaaggtctcaataaggtttggaaggga
aagttgtcagaggccaaggctagtggaaattctatgaagatccaggaagcacaggatatg
gttgtgctttatgattcattgcaacttgctcacaagtgtatacttaattccttttatgga
tatgtcatgcgcaagggtgcaagatggtactccatggaaatggctggagtagtgacatat
actggtgcaaaaatcattcagaatgcccgcttactagtagagaaaataggaaaaccactt
gaactagacactgatggtatctggtgtgcactacctggatcttttccggaaaatttcact
tttaaaacaaaagacccaaagaagaagtttacaatctcatacccatgtgttatgcttaat
gttgatgtggcaataaataacacaaatgatcaataccagacactcacagatccaatcagg
aaaacttatacaactcacagtgaatgctctattgaatttgaggtggatggaccatacaag
gcaatgatccttcccgcttccaaggaagaaggaattttaattaagaagcgatatgctgtt
tttaatgatgatggaaccctcgcagagcttaaaggttttgagatcaagcgcagaggtgaa
ctgaagctaataaaagttttccaggctgaactttttgacaagtttctccatggttcaact
ttagaggaatgctattcagctgttgcttcagtggcaaatggctggcttgatcttcttgat
aaccagggaaaggatattgcagacagtgagttgcttgattatatatcagaatcaagtacc
atgagcaaatctttagctgattatggtcagcaaaaatcttgtgctgttaccactgctaga
cgtctggctgactttcttggcgatacaatggtcaaagataaaggtcttcgatgtcagtac
atagtagcaagtgaacccaagggcacaccagtaagtgagcgtgctgttcctgtggcaata
tttgaaactgatgctgaggtaatgaagttctatgtccgaaaatggtgcaaggtctcatca
gatgttggcattcgatccatagttgactggtcctattacaagcagcggcttagttctgca
attcaaaaaattatcactattcctgctgcaatgcaaaaggttgcaaatcccgtccctagg
gtggttcatcctgattggttgcataagaaggtccgtgagaaggaggacaaatttcgccaa
cggaaattagttgatgcctttaaatcaatgaataggaatgaacactcaaaaaggcatgat
gactcaactcgtgtccctcttgtcatggatggtgatattgttaatgagttggaggacttt
ggaaataaggacaggagttctacatgcagacctagaccaattatacggcattatgaagct
aacaatgaacaacattcaaggaaggtctatgatcaagaagatgtggagcagcagcataat
aaaccattacaacaaaatgtttacagaagtgtagattatcaaggatggcttcaaataaag
aagcaaacgtggaaagatattctggaaaggagaaagaagcaaagattggagaattcaaag
aaatctgaccgtgttagtagtgttcttgaacaaatgaatggtaaggggaatcagggcaga
agtcatgtcagttcatatcttaaaaggcttgaggtagacttaacaaagcgtcactggcag
ataatacaactagtccccagttcactgataggccaattttttgcttgggttgttgttgat
gggagtatgcataagattcatgtttctgttcctagagtcttttacctcaattcaagatca
gcaattactgaaggatttatgggtaaacgtgttaacaagactcttcctcatggaaggcat
agttataacttgtatgaggtctcaattaatgaaattcaatatggggaagcaagccaaaaa
cttgcagctcttctagcagatcctgatgttgagggagtatatgaaactaaggtgccactg
gaatttaatgcaatagtccagcttggttgtgtatgtaaggtggacaagactgctaataaa
cgtagtctacaagaaccatggaatttaagtgaattgcacatgaagaccacagcagaatgt
gcttatcttgaacaatctatatctttcttttatttttaccatagcatctctgagggacgg
gctatatacattggatattttcctgcatcaaaaacaatgactgttgtggtggttaatccc
tatcaaaacaaagatttatccccggtttttcttgaaagacattttcatgatgcttgccag
tctttgtctattgagccacctccgaggaatggcattaattttaaggtggactatgttgca
catgtcaaggatgctgaagcagtgatgcaaagagcaataaatggccacagtcatgggagg
gaaaatcacatgcctatggttgctgtcattgaatgcccaaatgttcaattagtaaaattg
ggcatccgagctctggataattttccatgcctgagtgttccttataatgcacgtgatagt
cagtaccagattcttggatggcaacaagttgctgctaaaactggaatgcaacgttgtgct
gcatcagtccaatggctaaatcaaagaattgctctctcaagatatgcccatgtaccgctg
gggaactttgaacttgactggcttatatttattgcggatatcttcttttcaagagcattg
catgataatcaacaggtactttggatatctgatgatggccttccagatttaggtggaatt
aacagtgaacagaactgttttgtcgacgaggtccaacaacctgctcttacatatcctgga
gcttatagaaacgtaactgtggagctaaagatacaccacctggctgtaaatgctcttctc
aaatacaacctagttaatgaaatggaaggaggcactctattaagatttggtcatgaactt
gattctggagcattttccacaaatgatcaaaatggttttgacgagtctacctcatgtgta
caagcctttcgagtccttaaacagttgatccagcggtgcctagctgatgcagttacatcc
ggaaatgtttatgctgattcaattttgcaacatctgtatagatggctttgcagccctaaa
tcaaaacttcatgatcctgctctccaccagttactccacaaggtcatgcagaaggtcttt
gcattgttgttggcagagttccgcaagttaggtgctacaattgtatttgcaaacttctca
aaaattattatagacactgggaaatatgatctgtctagagccaaagcttactgtgacagt
ttgttaagaactatacaatcaagagatctatttgaatggattgagcttgaaccactgcag
ttctggtgctcgttgctattcatggatcagtataactatggtggaataccaacaaaatct
gatgaagctgtaaataatgaatctcaagtagacattatatcaagctggaatattgctgaa
tacttgccgaaaaaaatccaagaccattttgttttcatcgtttctcagttcatgtatatt
ccctggaattatgcaaaaaaacaagcacaaatcagggcctcattgcagaatggtgactcc
tgtacaccatcaattaacattggagccgcagaggcttttgaatcagaaataacggaattt
accaaagagcagatcggctcgtacttcacacacaaactgctaggaattgttcacgatatt
ggtcttcatatgaagggtatgaacagattagaaaacaaccagagtacatcgggccttcct
ccacttacgggtgatgtccatagaggggatgcttccttggaatttatcaagcatgtttgt
gctgtcctggcccttgaccaaagtgtgcagcatgaagttttggtcttgagaaaaaatttg
ctcaaatatgttgatgttaaggagtttgctcctgaagctaagtttcatggtccttgtcat
tccttcatcttatccaatgtcatatgcagctattgtaatgactgcagagacttggatttg
tgccgtgattcggctttgttaactgaggagtggcgttgtgcagttccacagtgtgcccag
ccttatgaccgtgaggtgatggagaatgctcttcttcaaactgtaagacaaagagaacgg
ctgtaccacctgcaagatctggtgtgtaccaggtgccatcaggtgaaagctgcacatttg
gctgagcaatgtgcatgtgcaggctcatttaggtgcaaggaagatgcaagtgaatttcgt
gaaaaaatgcaaattttcttgaacatagcttctcgtcagaaattccaacttctccaagaa
tgtacctcttggattttagaacttagatag

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