Glycine soja (wild soybean): 114380373
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Entry
114380373 CDS
T06057
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114380373
09122 Translation
03013 Nucleocytoplasmic transport
114380373
03015 mRNA surveillance pathway
114380373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114380373
03041 Spliceosome [BR:
gsj03041
]
114380373
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114380373
TREX complex
114380373
Spliceosome [BR:
gsj03041
]
Complex C
Other components
EJC/TREX
114380373
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114380373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_10
Motif
Other DBs
NCBI-GeneID:
114380373
NCBI-ProteinID:
XP_028195188
LinkDB
All DBs
Position
12:complement(4812287..4816951)
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AA seq
247 aa
AA seq
DB search
MSAAMDMSLDDIIKNNKKSGSGSSRGRTRPSGSGPTRRLPNRAANRAAPYATAKAPEATW
QHDLYADQHVAAAGYPAQGGRAASIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHAV
HYDRSGRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAPNGA
IGNFNGVPRSGQGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYH
AEAMQLN
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagccatggatatgtcgctcgacgacataatcaagaacaacaaaaagtctgga
tccggaagttcacgtggccggacccgaccctccggatccggacctactcgccggctcccc
aaccgtgccgccaaccgcgccgcaccttatgccaccgctaaggcgccggaggcaacgtgg
cagcacgatttatatgcagatcagcatgtggctgcggcggggtaccctgctcaaggtggt
cgtgcggcttccatagaaactgggaccaagctttacatttcaaacttggattatggtgtt
tccaatgatgatattaaggaattgtttgctgaagtgggtgacttgaaacggcatgcggtt
cattatgacaggagtggcagatcaaagggtacagcagaagtagtattttcacgacgagct
gatgctgtatctgctgtaaagagatacaacaacgttcaattagatgggaaaccaatgaag
attgaaattgtgggaacaaacatttccacacctggtgtagctcctgctcctaacggagct
attggaaattttaatggagttcctcgaagtggacaaggaagaggtggggcattaagaagg
ccaggaggaagagggcaaggcattcgaagggatcggggacggggaagaggtcgtggtgga
ggaggccgtggcgaaaaggtatctgctgatgatcttgatgctgatttggagaagtatcat
gcagaggcaatgcaattgaactga
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integrated database retrieval system