KEGG   Glycine soja (wild soybean): 114382174
Entry
114382174         CDS       T06057                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
gsj  Glycine soja (wild soybean)
Pathway
gsj03030  DNA replication
gsj03410  Base excision repair
gsj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114382174
   03410 Base excision repair
    114382174
   03420 Nucleotide excision repair
    114382174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gsj03032]
    114382174
   03400 DNA repair and recombination proteins [BR:gsj03400]
    114382174
Enzymes [BR:gsj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     114382174
DNA replication proteins [BR:gsj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    114382174
DNA repair and recombination proteins [BR:gsj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      114382174
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 114382174
NCBI-ProteinID: XP_028197208
LinkDB
Position
13:complement(29969476..29997909)
AA seq 2207 aa
MSGGRRRDGRDSRALKKRKLNRTPEEELEAKFGFDLFTEGEKRLGWLLTYASSSVDDEDS
YKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIE
KEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKVKSDAAEAFLSMSTERR
EQRPQDFLDCITDLREYDVPYHVRFAIDNDIRCGQWYDVGVPTNNGVTLEKKTDLLQRAE
VRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEF
EGCFKVTNVQNEIELLRLWFSHMQDVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELG
FKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCF
AKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMV
QAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFKLEPSAYQ
QLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLREAPIREECPLIYHLDVA
AMYPXIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKT
QIESEFVDDSEKNNRALSHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPV
TELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMV
VLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLE
LDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQTLTDPIRK
TYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGEL
KLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTM
SKSLADYGLQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIF
ETDAEVMKFYVRKWCKVSSDVDIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRV
VHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKKHNDSNRVPLVIDDDIVNELEDFG
NKDRSSTCRPRPIIRHYEANNERHSGKLNDQDVEQQHNKPLQQKVDKNVDYEGWLQIKKQ
TWKDILERRKKRRLENSKKSDRVNGVLRQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQII
QLVPSSLIGHFFAWVVVDGSMHKIPVSVPRVFYLNSRSDITEEFMGKRVNKTLPHGRHSY
NLYEVSINEIQYGEASKKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRS
LQEPWNLSELHMKTTVECAYLEQSISFFYFYHSISEGRAIYVGYFPALKAITVVVVNPYQ
NKDLSPTFLERQFHDACQSLSIESPPRNGINFKLDYVAHVKDAEAVMQRAINGHSHGREN
HMPMVAVIECPNVQLVKLGIQVLDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAAS
VQWLNQRIALSRYAHVPLGNFELYWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGING
EQNCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLGFGHELDS
GAFSTNDQNGFDESTSCAQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSK
LHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIVIDTGKYDLSRAKAYCDSLL
RTIQSRDLFEWVELEPLQFWCSLLFMDQYNYGGIPTKSDEALNDESQVDIISSWNIAEYL
PKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEVTEFTK
DQISSYFTHKLLGIVHDIGLHMKGMNRSENNQSTSGLPQLTGDVHRGDASLEFIKHVCAV
LALDHSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFVLSNVICSYCNDCRDLDLCR
DSALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYQLQDLVCTRCHQVKAAHLAE
QCVCAGSFRCKEDASEFREKMQIFLNIASHQKFQLLEECTSWILELR
NT seq 6624 nt   +upstreamnt  +downstreamnt
atgagcggtggccggagacgtgacgggagagacagcagagcattgaagaagcggaagctg
aaccgcactcccgaggaagagctcgaggcaaaatttggattcgatctcttcacagaaggc
gaaaagcgtctcggatggttactgacttatgcatcctcttctgttgacgatgaagacagt
tacaaagtatacagttgcgttgatctctactttgttgcgcaggatggctcttcattcaag
acaaaattcagatttcggccttatttctatgtagctacaaaggataaaatggagattgat
gttgaagcatacctgaaaagacgttatgaaggtcagattgcagatgttgaaattatagag
aaagaagacctggatcttaaaaaccatttatctgggttaagaaaatcttatttaaagctt
tcatttgatactgtgcaacaattgatggatgtgaagagagacctgatgcctactgttgaa
agaaataaggtcaagtctgatgctgcagaagcctttttgtctatgtcaacagaaagaaga
gaacaaagacctcaggattttctagattgcataaccgatcttcgtgaatatgatgttcct
tatcatgttcgctttgccattgacaatgatatacggtgtggccagtggtatgatgttgga
gtgcccactaataatggggttacacttgagaagaagacagatcttctgcagcgtgctgaa
gttcgtatttgtgcatttgacattgagaccacaaaacttccattaaaatttcctgatgct
gactatgatttaattatgatgatttcatacatggtagatggtcaagggtatttaatcata
aatagagagtgtgtcggggatgatatagaggatatagagtacactccaaaaccagagttt
gaagggtgttttaaggtgacaaatgttcaaaatgagattgagcttcttagattatggttt
tctcatatgcaagatgtgaaacctggtatctatgtgacatataacggcgatttctttgat
tggccattcctggaacgaagggcaacccatcatgggttcaaaatgagtgatgaattggga
ttcaaatgcgatacgaatcaaggggaatgtcgtgctagatatgcttgccatttagattgt
tttgcttgggttaaacgtgatagttatctccctcagggcagccaaggcctgaaggctgtt
acaaaagcaaagttgggttatgatccattggaggtgaaccctgaggacatggtttgcttt
gcaaaggaaaagccacagatgatggcctcctattctgtttctgacgcagtggcaacttat
tacttatatacaacttatgttcatccctttattttctctcttgcaaccattatacccatg
tcaccagatgaggttttgcgcaaaggtagtggaaccctctgtgaaatgttgcttatggtg
caggcatacaaggctaatgttatatgtcctaacaaacaccaatctgatccagagaagttt
tataataatcatcttcttgagagtgagacgtacattggtggtcatgtggagtgtcttgaa
agtggtgtattcagatctgatattccatctagttttaaactcgagccatccgcctatcag
caacttatcaacaaccttgatcgagatctacagtatgctataacagtggagggtaagatg
gatttggaatttgtttctaattatgatgaagtaaagaatgcaatcatggaaaagcttgta
aaattacgagaagcaccaatacgtgaagaatgtcccctcatttatcatctggatgtagct
gctatgtatccanacataattttaacaaaccgacttcagccaccgtcaattgttacggag
gaagtttgcactgcatgtgattttaatcgtcccggaaagacttgcctacgcaaacttgag
tgggtttggcgtggagaaacattcatggctaagaaaagtgactattatgctttaaagaca
cagattgaatcagagtttgttgatgattctgagaagaacaacagagccttatctcactat
tctgagaaatcatcaaaatcttttcttgaccttcccaaggcagagcaacaatcaagactg
aaagagcgtttaaagaaatattgccagaaggcatataaacgggtacttgacaaacctgtt
accgaacttcgtgaagcaggaatctgcatgcgtgaaaatccattttatgttgacactgtt
cgcagtttccgggatagaagatatgaatataaaggtctcaataaggtttggaagggaaaa
ctgtcagaggccaaggctagtggaaattctataaagatccaggaagcacaggatatggtt
gtgctttatgattcattgcaacttgctcacaagtgtatacttaattccttttatggatac
gtcatgcgcaagggtgcaagatggtactccatggaaatggctggagtagtgacatatact
ggtgcaaaaatcattcagaatgctcgcttgctagtagagaaaataggaaaaccacttgaa
ctagacactgatggtatctggtgtgcactacctggatcttttccagaaaatttcactttt
aaaacaagagacccaaagaagaagtttacaatctcatacccatgtgttatgcttaatgtt
gatgtggcaataaataactcaaatgatcaataccagacactcacagatccaatcaggaaa
acgtatacaactcacagtgaatgctctatcgaatttgaggtggatggaccgtacaaggca
atgatccttcccgcttccaaggaagaaggaattttaattaagaagcgatatgccgttttt
aatgatgatggaacccttgcagagcttaaaggttttgagatcaaacgcagaggtgaactg
aagctaataaaagttttccaggctgaactttttgacaagtttctccatggttcaacttta
gaggaatgctattcagctgttgcttcggtggcaaatggctggcttgatcttcttgataac
cagggaaaggatattgcagacagtgagttgcttgattatatatcagaatcaagtaccatg
agcaaatctttagctgattatggtctgcagaagtcttgtgctgttaccactgctagacgt
ctggctgactttcttggcgatacaatggtcaaagataaaggtcttcgatgtcagtacata
gtagcaagtgaacccaagggcacgccagtaagtgagcgtgctgttcctgtggcaatattt
gaaactgatgctgaggtaatgaagttctatgtccgaaaatggtgcaaggtctcatcagat
gttgacattcgatccataattgactggtcctattacaagcagcggcttagttctgcaatt
caaaaaattatcactattcctgctgcaatgcaaaaggttgcaaatcccgtccctagggtg
gttcatcctgattggttgcataagaaggtccgtgagaaggaggacaagtttcgccaacgg
aaattagttgatgcctttaaatcaatgaataggaatgagcactcaaaaaagcataatgac
tcaaatcgtgtccctcttgtgattgatgatgatattgttaatgagttggaggactttgga
aacaaggacaggagttctacatgcaggcctagaccaattatacggcattatgaagctaat
aatgaacgacattcagggaagctcaatgatcaagatgtagagcaacagcataataaacca
ttacaacaaaaagttgacaaaaatgtagattatgaaggatggcttcaaataaagaagcaa
acgtggaaagatattctggaaaggagaaagaagcgaagattggagaattcaaagaaatct
gaccgtgtaaatggtgttcttcgacaaatgaatggtaaggggaatcagggcagaagtcat
gtcagttcatatcttaaaaggcttgaggtagacttaacaaagcgtcactggcagataata
caactagttcccagttcactgataggccacttttttgcttgggttgttgttgatgggagt
atgcataagattcctgtttctgttcctagagtcttttacctcaattcaagatcagacatt
actgaagaatttatgggtaaacgtgttaacaagactcttcctcatggacggcatagttat
aacttgtatgaggtctcaattaatgaaattcaatatggggaagcaagcaaaaaacttgca
gctcttctagcagatcctgatgttgagggagtatatgaaactaaggtgccactggaattt
aatgcaatagtccagcttggttgtgtatgtaaggtggacaaaactgctaataaacgtagt
ctacaagaaccatggaatttgagtgaattgcacatgaagaccacagttgaatgcgcttat
cttgaacaatctatatccttcttttatttttaccatagcatctctgagggacgggctata
tatgttggatattttcctgcattaaaagcaataactgttgtggtagttaatccctatcaa
aacaaagatttatcaccgacttttcttgaaagacaatttcacgatgcttgccagtctttg
tctattgagtcacctccgaggaatggcattaatttcaagttggactatgttgcacatgtc
aaggatgctgaagcagtgatgcaaagagcaataaatggtcacagtcatgggagggaaaat
cacatgcctatggttgctgtcattgaatgcccaaatgttcaattagtaaaattgggcatc
caagttctggataattttccatgcctgagtgttccttataatgcacgtgatagtcagtac
cagattcttggctggcaacaagttgctgctaaaactggaatgcaacgttgtgctgcatca
gtccaatggctaaatcaaagaattgctctctcaagatatgcccatgtaccgttggggaac
tttgaactttactggcttatatttattgcggatatcttcttttcaagagcattgcatgat
aatcaacaggtactttggatatctgatgatggccttccagatttaggtggaattaatggt
gaacagaactgttttgtggatgaggtccaacaacctgttcttacatatcctggagcttat
agaaacgtaactgtggagctaaagatacaccacctggctgtaaatgctcttctcaagtac
aacctagttaatgaaatggaaggaggcactctattgggatttggtcatgaacttgattct
ggagcattttccacaaatgatcaaaatggttttgatgagtctacctcatgtgcacaagcc
tttcgagtccttaaacagttgatccagcggtgcctagcagatgcagttacatccggaaat
gtttatgctgattcaattttgcaacatctgtatagatggctttgcagccctaaatcaaaa
cttcatgatccagctctccaccagttactccacaaggtcatgcaaaaggtcttcgcattg
ttgttggcagagttccgcaagttaggtgctacgattgtatttgcaaactttacaaagatt
gttatagacaccgggaaatatgatctgtctagagccaaagcttactgtgatagtttgtta
agaactatacaatcaagagatctatttgaatgggttgagcttgaaccactgcagttctgg
tgctcgttgctattcatggatcagtataactatggtggaataccaacaaaatctgatgaa
gctctaaatgatgaatctcaagtggacattatatctagctggaatattgctgaatacttg
ccgaaaaaaatccaagaccattttgttttcatcgtttctcaattcatgtatattccctgg
aattatgcaaaaaaacaagcacaaatcagggcctcattgcagaatggtgactcctgtacc
ccatcaattaacattggagctgcagaggcttttgaatcagaagtaacagaatttaccaaa
gaccagattagctcttatttcacacacaaactgctaggaattgttcacgatattggtctt
catatgaagggtatgaacagatcagaaaacaaccagagtacatcaggccttcctcaactt
acgggtgatgtccatagaggggatgcttccttggaatttatcaagcatgtttgtgctgtc
ctcgcccttgaccacagtgtgcagcatgaagttttggtcttgagaaaaaatttgctcaaa
tatgttgatgttaaggagtttgctccagaagctaagtttcatggtccttgtcattccttc
gtcttatccaatgtcatatgcagctattgtaatgactgcagagacttggatttgtgccgt
gattcggctttattaactgaggagtggcgttgtgcagtgccacagtgtggccagccttat
gatcgtgaggtgatggaaaatgctcttcttcaaactgtaagacaaagagaacggctatac
cagctgcaagatctggtgtgtaccaggtgccatcaggtgaaagctgcacatttggctgag
caatgtgtatgtgcaggctcatttaggtgcaaggaagatgcaagtgaatttcgtgaaaaa
atgcaaattttcttgaacatagcttctcatcagaaattccaacttctcgaagaatgcacc
tcttggattttagaacttagatag

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