Glycine soja (wild soybean): 114383038
Help
Entry
114383038 CDS
T06057
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03015
mRNA surveillance pathway
gsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114383038
09123 Folding, sorting and degradation
03018 RNA degradation
114383038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114383038
03041 Spliceosome [BR:
gsj03041
]
114383038
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114383038
mRNA cycle factors
Stress granule specific factors
114383038
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Complex C specific factors
114383038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_RdRP1_2
RRM_7
RRM_MARF1
DUF5062
Motif
Other DBs
NCBI-GeneID:
114383038
NCBI-ProteinID:
XP_028198419
LinkDB
All DBs
Position
14:7404977..7410079
Genome browser
AA seq
652 aa
AA seq
DB search
MAQIQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVV
SVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGT
ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDK
LNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITS
AVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGR
FEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFV
AFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRM
PLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQ
GQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYD
MGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLE
MDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtgcagcatcagagtccggtgtcggctcctcctccgaacggcgtg
gctaacgcgccgaacaacccgaaccagttcgttacgacgtcgttgtacgtcggcgatctt
gagcagaatgtcaacgacgcacagctatacgatctgttcaaccaggtcgtccaagtcgtt
tcggtgcgcgtttgcagggaccttacgacgcgtcgttcactcggttatggctatgttaat
ttcagtaaccctcaggatgcggcgagggcattggatgtgctgaatttcactccactcaac
aacagacctattaggatcatgtattctcatcgggatcctagtcttaggaagagtggtact
gcgaatatttttatcaagaatttggataaggctattgaccacaaggccttacatgatact
ttttcttcttttggactcattctttcttgcaaaatagcaactgatgcttctggcctgtct
aagggctatggttttgttcaattcgacagtgaagagtctgcacagaatgctattgacaag
ttaaatggcatgttgatcaatgataagcaggtctatgtaggccattttctgcgaaagcaa
gatagagagaatgctctcagtaagacaaaatttaataatgtctatgtgaaaaacttatca
gagtcaaccacggatgaagagttgatgaaattttttggagaatatggtaccattactagt
gctgtaataatgagggacgcagacggtaaatcaaggtgttttggctttgtcaattttgaa
aacccagatgatgctgccaaagctgttgaaggacttaatgggaagaaagttgatgataag
gagtggtatgttggaaaagcccagaaaaaatctgagcgtgaacaagaactgaaaggacgg
tttgagcagagtataaaggaatctgctgacaaatatcaaggtgtgaacctgtatctcaag
aacttggatgatactatcagtgatgaaaaacttaaggaaatgtttgctgaatatggtaca
ataacttcatgcaaggttatgcgagaccccactggaatcggtagaggatcaggatttgtt
gcattttcaactcctgaggaagcatctcgtgctctcggtgagatgaatggtaaaatgatt
gctggaaaacctctgtacgttgcccttgcacagagaaaagaagacagaagagcaaggtta
caggctcagttttcacagatgaggcctgttgcaataacgccttctgttgcgccccgtatg
cctctctaccctcctggtgctcctggtcttggacaacaatttttgtatgggcaaggaccc
ccagccatgatgcctccacaagctggatttggataccagcagcaactagttcctggaatg
agacctggtggtggtcccatgccaagcttctttgttcctatggttcagcaaggccaacaa
gggcagcgcccagggggccgccgaggaacaggtcctgtgcaacaaccccaacagccaatg
ccaatgatgcagcagcagatgcttccaagggggcgtgtctatcgttaccctcctggccgc
aacatgcaagatgtcccacttcaaggtgtagctggtggaatgatgtcagtcccttatgac
atgggtggtctgccaatccgcgatgctgtgggacagccaatgcccattcaagctttggcc
acggctcttgcaaatgctccccctgaacagcagaggactatgctcggtgaagctttatac
ccgcttgtggatcagctggaacacgatgctgcagcaaaggttactggcatgcttctggag
atggaccagcctgaagttttacatctgattgagtcaccagatgctctgaaggcaaaagtt
gctgaagccatggatgtgttaagaaatgttgctcaacagcaaactaacccagctgatcaa
ctagcttcactctctctcaatgacaatcttgtgtcttag
DBGET
integrated database retrieval system
