Glycine soja (wild soybean): 114384245
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Entry
114384245 CDS
T06057
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114384245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114384245
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
114384245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
114384245
NCBI-ProteinID:
XP_028199702
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Position
14:4498935..4506313
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AA seq
1307 aa
AA seq
DB search
MAHRKRRLDQLKHPFSPHPFEAVAFGSWQAVEFIKIEGGTMSMHFVDNHHMVMEKGPLSD
IRIRSRNATLSDCSRFLRPGIDVCVLSAPQQSDDADAINIDPVWADAKISSVQRKPHDSE
CSCQFYVNFYVHQGSLGAELRTLSREIKVVGINQISILQKLESTPCENQHYRWASSEDCS
IISHTKLLLGKVLCDLSWLVVTTALKKVSICVRSLQDKLVYQVLGRDTVSTSLNNESHID
VVNFKTDKGMLVPIVSQVATLKTKRVDPEQESHEDKESPSYNVEGLRRSKRRNVQPERYL
GCEKVSQIDVGSFRNLPPVKIDTWKDNDIDHEMYIPLAGLFRWQKKCLEGDTDNHQKVKK
VSTCRELVVYKRKKTKSQKVRSGGDDQNEHQNHLAIIPLPAQHDPVEVIHCDDLYDKVTR
SYGNESSEISSKYHHLTGTTSKKNDVKLLTFESHYHAAKSDDGEKSDDLSWRYHYSYGAP
KSQRKGLSDLDDMVNLGNKWEGISSSKVVKGKKHRTTYFGSRDHGEEKRYNYKDRSLNAA
AYKDLINSYLKNINTRPTNEEPAIADQWKQTETPSSIGQKTETEVLRKEEAEEESEMDML
WRELEVSLASCYLEEDTEDSNAAVFTETLENPNAGCPHDFRMNEEIGIYCYRCGFVSTEI
KYITPPFIQHSVWHQEEKQIPEEDSKTKANEDDDIDLLPALDSPEKPVSQENDNVWVLIP
ELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKRRGGCVVSHTPGAGKTFLIIAFLVS
YLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSIVIPGVPK
PTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGVMV
LDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKAL
DPKYKRKGKVAKKASHLLESRARKFFLDQIAKKIDSSNGRERRKGLKMLRNVTNGFIDVY
EGGSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKVNGYPLELELLITLGSIHPWLVK
SAVCAEKFFTQAQLMELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFV
EYFEKYFGWTKGREVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAA
SRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYKRTTWKEWVSSMI
FSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNK
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcacacagaaaaaggcgtttagatcaactcaagcatccattcagtcctcaccccttt
gaagcagttgcatttggctcatggcaagccgtggagttcataaaaattgagggaggaact
atgtccatgcattttgtagataatcatcatatggttatggagaaaggacccttgtcagat
atacggataaggtcaaggaatgctactttatcagattgctcccgttttctacgtcctgga
attgatgtatgtgtgctatctgcccctcaacaatctgatgatgcagatgcaattaatatc
gaccctgtttgggctgatgccaaaataagctctgtacagagaaaacctcatgactctgag
tgctcgtgtcagttttatgtcaacttttatgttcatcaaggttcactcggtgcagagcta
agaactctcagtagggagatcaaagtggttggaatcaatcaaatatccatcctccaaaaa
cttgaaagtactccttgtgaaaatcagcactaccggtgggcatcatctgaggactgttcc
attatatcacacactaaattgcttctgggaaaagtgttatgtgatctttcatggttagtt
gttaccacagctttaaagaaggtttcaatctgcgtaagatctctacaagacaagctagtg
tatcaagttttgggaagggatactgttagcacttcattgaacaatgaatctcacattgat
gttgtgaatttcaaaacagacaaaggcatgttagtacccattgtttctcaagtagctaca
cttaaaaccaagagggttgatcctgaacaggaatcccatgaagataaagaatcaccatct
tacaatgtcgaaggcttaaggcgttccaaacgtcggaatgtacaacctgagcgttacctt
ggttgtgaaaaagtttcccagattgatgttggttcttttagaaacttaccaccagttaag
atagacacttggaaagataatgatattgatcatgaaatgtatataccattagccggcctg
tttcgttggcaaaagaagtgtctagaaggggatactgacaatcatcaaaaggtcaagaag
gtgagtacatgccgggagcttgtggtgtacaaaaggaagaagactaaatcccagaaagtg
aggtcaggaggtgatgatcagaatgaacatcaaaatcatctggctattattcctcttcct
gctcaacatgatccggtagaagttatacattgtgatgatctatatgacaaggttactaga
agttatggtaatgaatcctctgaaatttcttccaagtatcatcatctaactggtaccact
tcaaagaagaacgatgttaaattgttaacttttgagtctcattatcatgctgcaaagtca
gatgatggagaaaagagtgatgatttgtcatggagatatcattatagttatggcgcccct
aagtcacagaggaagggtttaagtgatctggatgatatggtgaatcttggaaataaatgg
gaagggattagttccagtaaagtagttaaagggaaaaaacaccgtacaacatattttgga
agtagagatcatggagaagaaaaaagatacaattataaagacagatccttaaatgcagct
gcctacaaggatttgataaattcatacttgaagaatattaatactagaccaaccaatgaa
gaaccagctattgctgaccagtggaagcaaacggaaacaccaagcagcattgggcaaaag
acagaaactgaggtgctccgcaaagaggaggcggaagaagaatctgaaatggatatgctg
tggagagaactggaagtgtcattggcatcatgctatctagaagaagacacagaagattca
aatgctgctgttttcactgagactctggaaaatccgaatgcaggttgtcctcatgatttc
agaatgaatgaagaaattggaatttactgctatagatgtggctttgtgagcacggagatc
aaatatattacacctccctttattcaacattcagtgtggcaccaagaggagaagcagatc
cctgaagaagattcaaagaccaaggctaatgaagacgatgacattgatctcttgccagct
ctagactctcctgagaaacctgtgtctcaagaaaatgataacgtttgggtgttaattccc
gaacttaaagcaaagttgcacgcccaccagaagaaagcatttgagtttctttggcaaaac
attgcagggtccatggacccgggattgatggaagcagcatccaaaagaagaggtggctgt
gtggtatctcatactcctggagcgggaaaaacttttctcatcattgcttttcttgttagc
tacttgaagttattcccagggaagaggccattagtccttgctccaaagacaacactctat
acttggtacaaggaatttatcaagtgggatattcctataccagtgtatctgattcatggt
cgtagaacctaccgtgtattcaagcagaaatcctcgattgttattcctggagttcctaag
cccactgatgatgtcaagcatgttttggattgccttgagaagatacaaaaatggcattcg
cacccgagtgttctgatcatgggttatacttcatttttaacattgatgcgagaggattca
aagtttgcacataggaaatacatggctaaggtattgagggaaagccctggggtcatggtg
ctggatgaagggcacaatcctagaagcaccaaatctaggctgagaaaagttttgatgaaa
gtgcagacagaactgagaatactgctttctggcacattgtttcagaacaatttctgcgag
tacttcaacactttgtgcttggcaaggccaaagtttattcatgaagtactgaaagcattg
gacccgaaatacaagaggaaaggaaaagtggcaaaaaaagcgagtcatttattagagtcg
cgagctagaaaattcttcttagaccaaattgctaagaaaattgactcaagtaatggtagg
gagaggcggaagggtctaaagatgttgagaaatgtgacaaatggtttcattgatgtgtat
gaaggtgggagttctgatggtctacctggtttgcaaatttatacattgctgatgaattca
actgatacacagcacgagattttgcatgaactgcacaagaaaatggccaaagtcaatgga
taccctctggagctagaacttttgataactctaggttcaatacatccttggttggtgaaa
tcagcagtatgtgctgagaaatttttcactcaagcgcaattgatggagctagagaaatgc
aagtttgatctgagaatagggtccaaagtaaaatttgttttgagtcttatctacagggtt
gtcaagaaggagaaggttcttatattttgccacaacattgcacctgttaaattatttgtg
gaatattttgagaagtactttggatggacaaaaggtagggaagtgttggtgctaactggg
gaactagagctgtttgaaagggggagagtgatggacaagtttgaggagcctggtggagta
gcaaagatactacttgcttcaatcactgcttgtgctgaaggcattagtttaacagctgct
tcaagagtgatcatgttggactcagagtggaacccttcaaaaacaaagcaagccattgcc
cgtgcctttcgccccggtcagcagaaagttgtttatgtttatcagctcttggtgacaggt
tcattggaggaagataagtacaaaagaaccacttggaaagagtgggtttcaagcatgatc
ttcagtgaggcctttgtggaggacccttctcagtggcaagctgagaagattgaagatgat
atactcagggaaatggttgcggaggaccggtctaaatcattccatatgatcatgaagaat
gaaaaagcttctaccaacaaataa
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