Glycine soja (wild soybean): 114385395
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Entry
114385395 CDS
T06057
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114385395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114385395
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114385395
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Step II factors
114385395
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
ABC_tran
Flavi_DEAD
GIPC1_GH2
PhoH
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
114385395
NCBI-ProteinID:
XP_028201254
LinkDB
All DBs
Position
14:50742733..50750766
Genome browser
AA seq
1203 aa
AA seq
DB search
MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKSKDSKKEKDSVSGKTTKFKALAIADNRDRAKELQKE
LESEAREKQKPEIEEDDGYRDRRDRRRDRYGRNRDDEDVRRDYSRRGRDRDDEDDRRDYG
RRGRDRDDEDDRRDHGRRGRDKHDRDRDRDRDRYERHRRDEHQEDGHGRENGDEDGNRKG
SRHGSGELELYAVYKGRISRVMETGCFVQLDDFRGKEGLVHVSQMATRRITNAKDVVKRD
QEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDAMRMNPQDSKGGPAARTGLS
GIRIVEEDDAGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGLLYQEEGAE
EELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQ
RTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSK
LSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGC
TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDEN
LSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIF
TIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYE
RMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVI
DPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPT
TIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTK
LGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKF
FQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVS
AGKNFTKVRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELV
MTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK
RRA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataatcccgaggatggattaaagaagctggaatacttgtcgctggtgtcg
aaggtgtgcaccgagttggagtcccacaccggcaccggcgacaaggttcttgccgagttc
atcactgagttgggtcgatcatcggaaaatgttgaggaattcgacgcgaaattgaaggag
aatggcgcggagatgccggattactttgtccgaacgctcctcaccattatccacgccatt
ctccctcccaagtcgaaggattcgaagaaggagaaagacagtgtcagtggcaagaccacc
aagttcaaggctctggctatcgcggacaacagggaccgcgccaaggagcttcagaaggag
ttagaatccgaggccagagaaaagcaaaagccagaaattgaggaagatgatgggtacaga
gatagaagagataggcgcagagataggtatggaagaaacagagatgatgaagatgttagg
agggattatagcagaagaggcagagatagagatgatgaagatgatagaagggattatggc
agaagaggaagagatagagatgatgaagatgatagaagggatcacggccgaaggggaaga
gataaacatgatagggacagagacagagatcgagatagatatgagaggcacaggagagat
gagcaccaagaggatgggcatggaagggagaatggagatgaagatggtaataggaagggt
tcacggcatggttctggtgaacttgaattatatgcagtttataaagggagaatctccaga
gtaatggagactgggtgctttgtccagttggatgacttcagagggaaggaggggttggtc
catgtctcgcagatggccacccggaggattaccaatgccaaagatgttgtcaagcgtgat
caagaagtgtatgtaaaagtgatctcagtttcaggtcagaagttgtctctttccatgaga
gacgttgatcaacatactggtaaggatctccttccgttgaagaagagctccgaggatgat
gcaatgaggatgaatccgcaggattcaaaaggtgggcctgctgccaggacggggctttca
ggtatcaggattgtggaagaagatgatgctggttcttcacggagacctctgaaaagaatg
agctctccagagagatgggaagcgaaacagttgattgcttcgggtgtcttgagtgtttca
gagtatccaacttatgatgatgagggggatggattgctgtaccaagaggaaggtgcagag
gaggagcttgagattgagttgaatgaggatgaacctgcattcttgcaagggcagagcaga
tactcaatggatatgtctcctgttaagatttttaagaatccagaaggttcgctgggtcga
gctgctgcactccagtctgcacttataaaggaacgtagggaagtgcgagaacaacaacaa
cgcacaatgcttgattcaattccaaaggatctcaatcggccttgggaagaccctatgccg
gagtcaggtgaaaggcatcttgcccaggagcttaggggtgttggcttatcagcctatgat
atgccggaatggaagaaggatgcctatgggaaaaccattacctttgggcaaaggtcaaag
ctttctattcaggagcagaggcagagtttgccaatttacaagttaaaaaaggaattgatt
caggctgtgcatgataatcaggtcttggtggttattggagaaactggttcaggtaagact
actcaagtcacacagtatcttgctgaagcgggttacaccacaagaggcaaaattggatgt
actcaaccccgtagggtggctgcaatgtcagttgcaaagagagttgcagaagagtttggt
tgtcgattgggagaggaagttggttatgccattcggtttgaggattgcactggaccagat
accgttatcaagtacatgacggatggtatgcttcttagggaaatattggttgatgagaat
ctgtcacagtactctgttataatgcttgatgaagcccatgaaagaactatacatactgat
gttctttttggactgctgaagcagctagtgaagcgtagacctgaattaagattgattgtc
acatctgctactctggacgctgagaaattttcaggatatttctttaactgtaacatcttt
actattcctggtagaacttttcctgtggaaatactatacactaaacagcctgaaagtgat
tatttagatgcagctttaatcactgtcctacagatccacttgacagagcctgagggagac
attcttctctttttgactggtcaagaagagattgattttgcttgccaatctctctatgag
agaatgaaaggattaggtaagaatgttccagagctgatcattttaccggtttatagtgcc
cttcctagtgaaatgcagtctaggatatttgaccctgctcctcctgggaaaaggaaagtg
gttgtggctactaacattgctgaggcttctttaactattgatgggatattttatgtgatt
gatcctggatttgctaagcaaaatgtttataatccgaagcaaggacttgattctttggtg
ataactccaatttcacaagcatcagccaaacaaagagctggacgtgcagggcgtactgga
cctgggaagtgttatcgtctctacactgagagtgcatataggaatgagatgtctcctact
acaattcctgagattcaaaggataaatctggggatgactactcttaatatgaaagctatg
gggataaatgatctgctgtcttttgattttatggatccaccatcaccccaagccttgata
tctgccatggagcagctttacagtcttggagcactcgacgaagagggccttttaactaaa
ttagggaggaaaatggcagaatttcctttggatccaccgttatctaagatgttgcttgcc
agcgtggaccttggatgcagtgatgagattttgaccataattgccatgatccagaccggc
aatattttttacaggccaagggaaaagcaagcccaagcagatcagaagagggcaaagttt
ttccagccagagggtgaccatcttaccctacttgctgtttatgaggcttggaaagccaag
aatttttccgggccctggtgttttgaaaacttcgttcaatcccgatcattgagaagagca
caggatgtcaggaaacaacttctcaccattatggataagtacaaattggatgttgtaagt
gcgggaaaaaacttcaccaaagtcagaaaggctatcactgcaggattctttttccatgct
tctagaaaggacccccaggaaggttacagaacccttgttgagaatcagcctgtgtatatc
catccaagttcagctctgttccagagacagccagactgggtcatctaccatgagcttgtg
atgacaactaaggaatatatgcgtgaggtcactgtcatagaccccaaatggcttgttgaa
ttggctccaagatacttcaaagtggcagatcctacaaagatgagcaagcgaaagcgtcaa
gagcgaattgaacccctttatgacagataccacgagccaaattcatggcgtttgagtaaa
cgccgtgcataa
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integrated database retrieval system
