Glycine soja (wild soybean): 114386340
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Entry
114386340 CDS
T06057
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03013
Nucleocytoplasmic transport
gsj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114386340
03015 mRNA surveillance pathway
114386340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114386340
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114386340
mRNA cycle factors
P-body specific factors
114386340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Nop14
Motif
Other DBs
NCBI-GeneID:
114386340
NCBI-ProteinID:
XP_028202132
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All DBs
Position
15:22174257..22193020
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AA seq
1187 aa
AA seq
DB search
MDHHEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLILELFFVGVIEDGGIFIN
IIKDLSSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNVASLAEALDMQPPVMPEDGHTTRVTSGEDGVSSASGKDSSVVEPIWDDEDTRTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKNQDLTTEILPESDKGQQTTHESGEVSTESNALPEA
ESTERVKDKEEKDKSNELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTSMKDVCSILLQ
MLEEEFNFLINKKDQMNIESKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILIHGHGTSEQDVLDPPEDCFRMRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGTLPLDIEFDLQDLFVDLRPNMVRYTSIEEVNAALVELEEHDRIVSADK
VSSEKHSGTEKPLIRTTSTTAVVGNGQSIDNGTEENEVQDDNDSETDSGSDTIDVEGHDE
ELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVVQ
ESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEALDEDTGGNKEVQVRV
LVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEEHNGLGTQ
PTNWMQSVGYKGGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccacgaggatgaaagtaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaaaaaatctattgaggcgaagctggctttacggcaaagcaatttgaat
ccagaaaggcctgattcaggatttttaaggacattggattctagcattaagcgcaacact
gctgttattaagaaactgaagcagattaatgaagagcagcgtgaagctctgatggacgag
ttgcgaagtgtcaacttaagcaaatttgtcagtgaagctgtggctgctatatgtgatgcc
aagcttagaagttctgatatacaagctgcagttcagatctgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctggttcaagggcttctcaaagtcttctctcctggaaaa
cctggtgatgaatcagatacagacagaaatttgaaggcaatgaagaagcgcagctctcta
aagcttatattggaacttttttttgttggagttattgaagatggtgggatttttatcaat
atcataaaagatcttagcagtggggaacagctaaaagatcgggatgctgcacaaacaagt
ttgacccttctttcgagttttgctcgccaagggagaatttttctaggactttctgttagt
gggccggaaattcatgaggagttttttaaaggccttaacatcacagcagatcagaagaaa
gttttccggaaagcatgctattccttttatgatgctgcagctgaactacttcagtctgag
cattcttcacttcgcttaatggagcatgaaaattctaagattttgaatgcaaaaggagag
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgaccatctgtac
cgtaatgttgcatcattagcagaagcacttgatatgcagcctcctgtaatgccagaggat
ggccacacaactagggttaccagtggtgaggatggggtttcttctgcttctggtaaagat
tcttctgttgttgaacccatatgggatgatgaagatacaaggactttctatgaatgttta
cctgatcttagagcttttgttcctgctgtgcttttgggagaaacggagccaaaaagcagc
gagcaatctgcgaagaatcaagacctaacaactgaaatattacctgaatcagacaaaggt
caacagaccactcatgaaagtggagaggtctctacagagtctaatgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaggaaaaagacaagtctaacgaattggacaga
gagaaggaaaaagaaaaagataatgacaaaaagggagaaaatgaaaaagacaaactcaga
agtcttgaagggacaaatttggatgctctactgcagaggcttccgggttgtgtgagccga
gaccttattgatcaattaactgtggagttctgttatctaaattcaaaatcaaatcggaaa
aagcttgtgagggctttgttcaatgtaccaaggacatctctggagctgttaccatattat
tcccgcatggttgccacactctcaacttctatgaaggatgtctgctccattcttttgcag
atgttggaggaggaattcaacttcttaataaataaaaaggatcagatgaacattgagtcc
aagataaggaacatcaggttcattggagaactttgcaagttcaaaattgcccctcctggc
ctagtcttcagctgtttgaaggcctgtttagatgattttacacatcataacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactactata
cgcatggctaacatgttggagatattgatgcgcttgaaaaatgtaaaaaacttggatccg
agacatagcactttggtggagaatgcatactacctctgcaaaccaccagaaagatccgca
cgagtagccaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgataagtctaccattgagcatgtgctgaggcaactccgtaaattaccatggaatgaa
tgtgaaccatatcttttgaaatgcttcatgaaggtctacaaaggaaaatatggtcagatc
cacctgattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
atcgttgatgaggttctggaggagattagagttgggcttgagttaaatgactatgggatg
cagcaaagacgcattgcttacatgcgattcttaggggagctatacaactatgaacatgta
gactcatctgttatttttgagacactatatctcattctcatccatggccatgggacatca
gagcaagatgtactggatccacctgaagattgttttcgcatgaggttgatcattactctg
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcgattc
ctaatacacttccagaggtatattttaagcaaagggacactgcctctggacattgaattt
gacttacaggatctgtttgtggacttgcgtcccaatatggttcgttacacttctatcgag
gaagtgaatgcagctctagtagaactcgaggaacatgatcggattgtttctgctgataag
gtcagcagtgaaaaacattctggcactgagaagcctttaattaggaccacttccactact
gcagtggttggcaatggacaaagcattgataatggtacggaagaaaatgaagtgcaagat
gataatgacagtgagactgattcagggagtgacacaattgatgtggagggacatgatgaa
gagttggatgaggagaatcatgatgatgggtgtgagactgaggatgatgatgatgatgat
gatgatgggcctggaccagcttctgacgaggaggatgaagtccatgtgagacaaaaagtg
accgaggtggaccctctggaagaagccaatttcgatcaggagctcaaggctgtagtacag
gagagtatggaacagcgaaggcaggagctacgaggtcgtcctacattgaacatgatgatt
ccaatgaatgtatttgagggatctgccaaggatcaccatgggaggggagttggtggggaa
agtggtgatgaggccctggatgaggatactggaggaaacaaagaggttcaggtgagagtt
cttgtgaagcggggaaacaagcagcaaacaaagcagatgttcatcccacggaattcctca
ctggtgcagagtacaaaacagaaagaagcagcggagcttcaagagaaagaagacatcaag
aggcttgtcttggagtataatgatagagaagaggaggagcataatggattagggacccag
ccaacaaactggatgcagagtgtaggttacaaaggtggtggccgtggcagcactttggaa
ggaaacagtggcaggggtagtggatcaagacatcggcatcataattattctggcagtgga
atctattacagtagaagaaagtga
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