Glycine soja (wild soybean): 114386433
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Entry
114386433 CDS
T06057
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114386433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gsj03041
]
114386433
Enzymes [BR:
gsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114386433
Spliceosome [BR:
gsj03041
]
Complex C
Other components
Step II factors
114386433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
Flavi_DEAD
AAA_30
nSTAND3
T2SSE
AAA_16
Sigma54_activ_2
Microtub_bd
TMEM247
ABC_tran
cobW
Motif
Other DBs
NCBI-GeneID:
114386433
NCBI-ProteinID:
XP_028202238
LinkDB
All DBs
Position
15:complement(2587974..2598088)
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AA seq
1272 aa
AA seq
DB search
MEKDGAGAGAGVVDIDKITATLEPEKPTSGGLYVPGKDRMVYVPQERKSRLGLDALASAK
RSQHDAGFKVPKERTISIAASAEDEDKSELSVSEESGHDGIVNRRRHTNRRYRDTTNETS
HSESSVTEDHYGDTNRTPSSEHKGSDVPASPSGYDREDHRSERRHHRDDSRSGNGRVRHW
DYYESKGSYSERDSHSRYDREYGRKRNRYEGSRRMPGRSDWDDGQWEWGDTPRRDSVSSS
RRHQPSPSPMFVGASPDARLVSPWLGGHTPHSSFTSPSPWDHVSPSPVPIRASGSSAKSS
VSRHNGRSHQLSFSSETSNRYEDEMADKSDLGEEHKYDITESMRLEMEYDADRAWYDREE
GSTFDGDNSSFFLGDEASFQKKETELAKRLVRRDGTKMSLSQSKKLSQLTADNAQWEDRQ
LLRSGAVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEPIMPLKDPTSDMA
IISRKGSTLVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAEVGEDGEI
DFKEEAKFSQHMKKGEAVSDFAKSKTIAEQRQYLPIFSVREELLQVVRENQVVVVVGETG
SGKTTQLTQYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKIGYAIRFEDV
TGPNTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDF
KLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKSPVEDYVEGAVKQAMTIHITS
PAGDILIFMTGQDEIEAACYALAERMEQMVSSSKKAAPKLLILPIYSQLPADLQAKIFQK
AEDGARKCIVATNIAETSLTVDGIFYVIDSGYGKMKVYNPRMGMDALQVFPVSRAAADQR
AGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMD
PPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGEQLGCLEEVLT
IVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFL
HVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDIVRKAICSAYFHNSARLKGVGEYVNC
RNGMPCHLHPSSALYGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKD
SDTSLLEHKKRQKQEKTAMEEEMENLKKVQAEVEKERKQKEKEKMAKHQQQISMPGLRKG
SSTFLRPKKFGL
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggatggagctggagctggtgctggtgtcgttgacatagacaagatcacggcg
acattggaaccggaaaaacctaccagtggtggactctatgttcctggcaaggataggatg
gtttacgtgcctcaggagagaaaatcgcgtttaggactcgatgcccttgccagcgcaaaa
cggtctcaacatgatgcgggattcaaggtgccaaaagaaagaaccatttccattgcagca
tctgcagaggatgaagataagtctgagttgtctgtttctgaagaaagcgggcatgatggg
attgtcaacagacgcagacacactaatcggagataccgtgatacgaccaatgaaacatct
cattcagaaagttctgtgaccgaagatcactatggtgataccaaccggactccttcatct
gagcataagggttcagacgttcctgcatcgccttctggatatgacagggaggatcatagg
agtgagaggaggcatcacagggatgattcaagaagcggtaatggaagagtgcggcattgg
gactactatgagagcaagggatcttattcagaaagggattcacatagtaggtatgaccgt
gagtatggtagaaagcgaaacagatatgaaggttccaggagaatgcctggcaggtctgac
tgggatgatggccaatgggaatggggagacactccacgaagggacagtgtctctagttct
agacgtcatcaaccttcaccatccccaatgtttgtaggtgcctcacctgatgcacgatta
gtttcgccatggttggggggccacactcctcattcatccttcacttcaccttctccctgg
gaccatgtttctccgtctcctgtcccaatacgtgcttctggatcttcagccaaatcttct
gtctctagacataatggaaggtcacatcaactaagtttttcatctgaaacttcaaataga
tatgaggatgaaatggctgataagtctgacttgggtgaagaacacaagtatgacattact
gaaagcatgcgtttagagatggaatacgatgctgaccgagcatggtatgatagagaggaa
ggtagcacatttgatggcgataactcgtcattttttcttggagacgaagcttcctttcag
aagaaagagactgagttggccaaaagactggtccgaagagatgggaccaagatgtccctt
tctcagagcaagaagttgtctcagctcacagctgataatgctcaatgggaggatcggcaa
ctgctgagatcaggagctgttagaggtacagaggttcagactgaatttgacgatgaggaa
gaacacaaagttattcttcttgttcatgatacaaagcctcctttccttgatggcagagtt
gtttttactaaacaggcagagcctattatgccattaaaagatccaacatctgacatggct
ataatatctcgtaaaggatctactcttgttagagaaatccatgagaagcagagtatgaac
aagtctcgccaacgcttttgggaacttgctggctcaaaacttggtgatatcttgggtgtt
gaaaaaacagcagagcagattgatgcagacactgccgaagtgggtgaagatggtgaaatt
gattttaaggaggaagctaagttttcacagcatatgaagaagggagaagccgtgagtgac
tttgctaagtcaaaaaccattgcagagcaaaggcaatatctgcctattttttcagtgaga
gaagagttattacaggtggttcgtgaaaatcaggtggtggtggtggtcggagaaaccggt
tcaggaaagacaacacaattgacacagtatctgcatgaagatggctatactataggtggt
atagtaggctgcacccaaccaaggcgtgtggcagctatgagtgttgccaagagagttagc
gaagagatggatacagagttgggtgataaaattggctatgctatacgttttgaggatgtg
accgggccaaataccattataaagtacatgactgatggggtacttctacgtgaaacactc
aaagactctgatctagacaagtatcgggttattgtcatggatgaagcccatgaaagatca
ctaagcacagatgttctttttggaatattgaagaaagttgtagcccaacgtcgtgatttc
aagctgatcgtcacatcagcaactctgaatgcccagaaattttcaaatttctttggaagt
gtaccgattttccatattcctgggcgaacatttcctgtgaatatattatggagtaaatct
ccagttgaagattatgttgaaggtgcagtgaagcaggctatgactattcacataaccagt
cctgctggtgacatccttatcttcatgactggccaagatgagattgaggcagcttgctat
gcccttgctgaaagaatggagcagatggtgtcatcttcaaagaaagctgcccctaaactc
ttgattcttcccatatactctcagcttcctgctgacttacaagctaagatattccagaaa
gctgaagacggagcccgtaaatgcattgtggccactaatattgctgagacatcattaact
gtcgatggtatcttctatgtcatagactcgggctatggtaaaatgaaggtgtataaccct
aggatgggcatggacgctctccaagtcttccctgttagtcgtgctgctgctgaccagcgt
gccggtcgagctggtagaactggccctggtacgtgctatcggttgtataccgagagtgcc
tacctaaatgaaatgttgcccagtcctgttccagagattcagaggactaaccttggcaat
gtggtcttgttgctgaaatctcttaaagttgaaaatttacttgattttgatttcatggat
ccacctcctcaagataatattctcaattccatgtaccagttgtgggtgttgggtgccctt
aacaatgtggggggattaactgatcttgggtggaaaatggttgaatttccactggaccct
ccgcttgctaagatgcttttgatgggtgaacagttagggtgtcttgaggaggttttaaca
attgtttccatgctgtcagtgccatctgttttctttagacccaaggaccgggcagaggag
agtgacgctgcacgggaaagattttttgtgccagagtctgatcatttaaccctctacaat
gtttatcagcaatggaaacaacatgattacagaggtgattggtgcaacgatcattttttg
catgttaaaggtctaagaaaggctagagaggttagatcccaactgcttgatattctgaag
actttaaagatccccttaacctcatgttggccggatactgacattgtcaggaaagcaatt
tgttctgcatacttccacaattcagcaagattaaagggtgtgggagagtatgttaactgc
aggaatgggatgccgtgtcatcttcatcccagtagtgctctatatggtatgggttgcact
cctgagtatgtagtttatcatgagttaatcctgaccaccaaggagtacatgcagtgtgcg
acagcggtggagccccagtggctggctgagctgggacccatgtttttctctgttaaggat
tctgatacatcattactggagcataagaagagacaaaaacaagagaaaacagctatggag
gaggagatggagaacttgaagaaggtgcaagcagaggttgagaaagaaaggaaacagaag
gagaaggaaaagatggctaagcatcagcagcaaatctccatgccaggtttacgaaagggt
tcttccacattcttgagaccaaagaagtttggtttgtaa
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