Glycine soja (wild soybean): 114387528
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Entry
114387528 CDS
T06057
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03030
DNA replication
gsj03420
Nucleotide excision repair
gsj03430
Mismatch repair
gsj03440
Homologous recombination
gsj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114387528
03420 Nucleotide excision repair
114387528
03430 Mismatch repair
114387528
03440 Homologous recombination
114387528
03460 Fanconi anemia pathway
114387528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsj03000
]
114387528
03032 DNA replication proteins [BR:
gsj03032
]
114387528
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114387528
Transcription factors [BR:
gsj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114387528
DNA replication proteins [BR:
gsj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114387528
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114387528
MMR (mismatch excision repair)
114387528
DSBR (double strand breaks repair)
HR (homologous recombination)
114387528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF223
BRCA-2_OB1
Motif
Other DBs
NCBI-GeneID:
114387528
NCBI-ProteinID:
XP_028203528
LinkDB
All DBs
Position
15:16171261..16173953
Genome browser
AA seq
637 aa
AA seq
DB search
MSLNLTANAIPAIIGGDVNAKPLVQVLDVALVSNSNNSQQQQQRYRLLLSDAVFSHHAML
ATQLNDRVRTGRVQKGSVVQLLDYICTPLKNRKIIVILNMETIMDEFEIIGNPKPYMDSD
IPTVRASDSASADSTVENLPRSYNSNNSSAGQNASHNNTQNFRPTIQPPYQPPPLYKGRG
PVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE
IRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCPDE
DGSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSS
GSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGSISTTQLFINPD
FPEAHSLREWFELVGKDSASLSISKDIIPGALKNEVRKTVSQIKDEGLGRSDKPDWITVR
AAILFIKTDTFCYTACPLMIGDRQCNKKVTRLGNTRWQCDRCNQEFEECDYRYLLQVQIL
DGTGLAWVTAFQEAGEEIMDYSAKDLYFLKHEEQDDEKFGEIIKSRLFNQFMFRLKIKEE
LYGDEQKVKITVVKADKVNYSSESRYMLDTISKFCRQ
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaatctcacggcaaacgcgatcccggcgataatcggtggcgacgtgaacgcg
aaaccgctggttcaggttctggacgtggcgctagtctccaatagcaacaactcgcagcag
cagcagcagaggtaccgtcttctgctatccgacgccgttttctctcaccacgcgatgctc
gcaactcagctcaacgaccgagtccgaaccggtcgagttcagaagggttcggttgttcag
cttctcgattatatatgcactcctctcaagaaccgcaagattattgtgattctaaacatg
gaaactataatggatgagtttgagatcattgggaatccaaagccatatatggattctgat
ataccaacagtgagagcttcagattcagcttcagctgatagcactgttgagaatttgccc
aggagttataatagtaataatagttctgctggtcaaaatgcaagtcacaataacacgcag
aatttcaggccaactattcaacctccataccaaccacctccactttacaaaggccgtggg
ccagttgtgaaaaatgaggcaccagcacgcatcattcctatagctgctttaaatccgtat
cagggtcggtgggctatcaaggcaagggtaactgctaaaggggatctgcgccgctataat
aatgctcgtggtgatgggaaagtcttctcatttgatctccttgattctgatggaggtgaa
atacgagtaacatgctttaatgctgttgttgaccgcttctataatgtaattgaggttggt
aaagtttacatgatatccaaaggtagcttgaaacctgctcagaagaatttcaaccatttg
aagaatgaatgggaaattttgttggaatcatcttcaatggttgagctctgcccagacgag
gatggttctatacctagacagcagttctccttcaggcctattagtgacattgagaatgtt
gacaataactccatccttgatgttattggggtagtgacatctgtgaatccttcagttccc
atcttgaggaagaatggaatggaaacccagagaagaattttgagtctgaaggacagttct
ggcagtagtgttgaacttacactgtggggcgaattctgcaacagggaaggacaacagctt
caagacatggtggatgctggatttttcccaattttagcagtcaaaactgggaaggtgaat
gattttagtggaaagtcgataggttctatttctaccacgcagcttttcataaatcctgat
tttcctgaggctcatagcttaagagaatggtttgaactggtaggaaaagattctgcctcc
ttatcgatttctaaggacattattcccggagcattgaagaatgaggtccgcaaaactgtg
tctcaaatcaaggatgaaggtctagggcggtcagacaagccagactggataacagtaagg
gctgctatattattcatcaagacagatacattttgttacacagcttgccctctgatgatt
ggagatcgacagtgcaataagaaagtgactaggctaggaaacaccaggtggcaatgtgat
agatgcaaccaagaatttgaggagtgtgattaccgataccttctccaagttcaaattctt
gatggcacaggattagcttgggtaactgctttccaagaagcaggggaagagattatggat
tactcagcaaaggatctgtactttttgaaacatgaagagcaggatgatgagaagtttgga
gaaataatcaagagccgactcttcaaccagttcatgtttaggctgaaaatcaaagaggaa
ttatacggcgatgaacagaaggtgaagattactgtggtcaaggctgataaggtgaactac
tcttcagagagtagatacatgcttgatacgatttccaagttttgtaggcagtaa
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