Glycine soja (wild soybean): 114387634
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Entry
114387634 CDS
T06057
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114387634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114387634
03041 Spliceosome [BR:
gsj03041
]
114387634
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114387634
Spliceosome [BR:
gsj03041
]
Complex B
Other components
Prp19-related factors
114387634
Complex C
114387634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
114387634
NCBI-ProteinID:
XP_028203641
LinkDB
All DBs
Position
15:5200954..5206720
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AA seq
918 aa
AA seq
DB search
MAIAQDLYPSEDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPVTHSQYDTLNNTFERALVTMHKMPRIWIMYLKTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLLFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
LNSSLWQEASERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVITVRDFSVIFDSYSQFEESML
AYKMEEMGLSDEEGDEEEGEESGVEEGDEEDIRFKGRLVEEDFERKILHGFWLNDKKDID
LRLARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPM
KAVGKPHTLWVAFAKLYEQHKDLANARVIFDKAVQVNYKTVDNLASVWCEWAEMELKYKN
FNGALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTCA
VYERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFV
RRYGKNKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN
NEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRA
RGIFVFASQFADPRSDPEFWNKWHEFEVLHGNEDTFREMLRIKRSVSASYSQTHFILPEY
LMQKDQTVNLDEAKDKLKQAGIPEDEMAALERQLAPAVDNTVTKDRKVGFVSAGVESQCD
RGVKTSANHEDIELPEESDSDDDDKIEIAQKDVPSAVFGGLIRKRDENENNGEVDVTKDK
DNENRLGALERIKRLRQN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcgcaagatttgtatccctcagaagacgaccttttgtacgaagaggagttg
cttcgaaaccctttcagcctcaagctatggtggcgctacctgattgcgcgttctgaagct
ccgttcaagaagcgcttcgtcatttacgagcgggcactgaaggcgcttcccggaagctac
aagctgtggcacgcctacctccgcgagcgcctcgacctcgttcgcaacctccccgtcact
cactcacagtacgacacgctcaacaacaccttcgagcgcgccctcgtaactatgcacaaa
atgccgcgaatttggatcatgtatctgaaaaccctaacgaatcagaaattggtcactcgc
acacgcaggacattcgatagggctctctgcgctctccctgttacccagcacgaccgcatt
tgggagccctatcttctgttcgtgagccagaagggtattcctattgagacctctcttcgg
gtttatcgcaggtatttgaagtatgacccttctcacattgaggattttattgagtttttg
cttaattcgagtctctggcaagaggcttctgagaggctggcttctgtgctcaatgatgac
caattttactcgattaagggtaagaccaagcaccggctttggttggagttgtgtgatttg
ctcactcgccatgcgaatgaggtttctgggttgaatgtggatgctataattaggggtgga
attaggaagttcactgatgaggtgggtaggctttggacttcgttggctgagtattacatt
aggaggggtttgcatgagaaggcaagggatgtgtttgaggagggcatgtctactgttatt
actgtcagggattttagtgttatatttgattcttactcgcagtttgaggagagcatgctt
gcttacaagatggaggagatggggttgagtgatgaagagggtgatgaggaggagggtgaa
gagagtggcgttgaggaaggggatgaagaggatattcgtttcaaaggaagattggtggag
gaggattttgagaggaagattttacatgggttttggttgaatgacaagaaagacatagac
ttgaggttggctcggtttgattaccttatggaaaggaggcctgaattggctaacagtgtg
cttttgcgtcaaaatcctcataatgttgaacagtggcaccggagggtgaagctctttgaa
gggaaccctaccaagcagatactcacttacacggaagcggtgaggacgattgatcccatg
aaggcagtgggaaagcctcatacattgtgggttgcttttgccaaactgtatgagcagcac
aaagatctagccaatgcccgtgtcatatttgacaaggcagtgcaggtgaattacaaaact
gtggataatctggctagtgtctggtgtgagtgggctgaaatggagttgaagtataaaaat
ttcaatggagcacttgagctgatgaggcgggctacagcagagccatcagttgaggtcaaa
cgaagagtggctgctgatggtaatgaaccagtccagatgaagctgcataaatccttgaga
ttgtggacattttatgttgatttggaggaaagcctaggtactttggagtctacgtgtgct
gtttatgagcggatcttggatttacgaatagccacaccacaaataataatcaattatgca
tacttcctggaggaacataaatactttgaagatgcttttaaagtttatgaaagaggtgta
aagatatttaagtacccacatgttaaagacatatgggttacatatctctctaaatttgtg
aggagatatggaaagaataagttggagagagcaagagaactatttgaaaatgcagttgaa
tcggccccagctgatcaagtgaaaccactttacctgcaatatgccaagctggaggaggac
tatggattagcgaagcgagctatgaaggtttatgatcaagcaactaaggctgttcctaat
aatgagaagttaagcatgtatgaaatatatattgctcgtgctgctgagatatttggtgta
cccaaaacaagggagatctatgaacaggcaattgaatctggtcttccagacaaggatgtc
aaaaccatgtgtttgaagtatgctgagttggaaaaaagtttgggagaaatcgaccgggcc
cgtggaatatttgtatttgcctctcagtttgcagatcctcgatctgatccagagttttgg
aataagtggcacgagtttgaggttctgcatgggaacgaagatactttcagagaaatgctt
cgtattaagcgaagtgtctctgcaagctacagccagacacatttcatactgcctgaatat
ctgatgcagaaggatcaaactgtgaatcttgatgaggccaaagacaaattgaaacaggct
ggaatccccgaggacgaaatggctgctttagaaagacaattagccccagcagttgacaat
acagtgacaaaagataggaaagttgggtttgtgagtgctggagtggaatctcagtgtgat
agaggggtaaaaactagtgcaaatcatgaggatatcgagttaccagaagaaagtgattct
gatgatgatgataagattgaaattgcacaaaaagatgttccttctgctgtgtttggtggt
ttgattagaaagagagatgagaatgaaaataatggagaagtagatgtcacaaaagataag
gataatgaaaatcggcttggtgctcttgagagaatcaagaggctaagacaaaattaa
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